6z0k - Revision history

OCA at 13:39, 24 January 2024

OCA — Wed, 24 Jan 2024 13:39:22 GMT

←Older revision		Revision as of 13:39, 24 January 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6z0k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_acidilactici_7_4 Pediococcus acidilactici 7_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0K FirstGlance]. <br>		<table><tr><td colspan='2'>[[6z0k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_acidilactici_7_4 Pediococcus acidilactici 7_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0K FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=EDO:1~~,2~~-ETHANEDIOL'>EDO</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~HMPREF9024_01129 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=563194 Pediococcus acidilactici 7_4])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0k OCA], [https://pdbe.org/6z0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0k RCSB], [https://www.ebi.ac.uk/pdbsum/6z0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0k ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0k OCA], [https://pdbe.org/6z0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0k RCSB], [https://www.ebi.ac.uk/pdbsum/6z0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0k ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D2EK17_PEDAC D2EK17_PEDAC]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pediococcus acidilactici 7_4]]		[[Category: Pediococcus acidilactici 7_4]]
-	[[Category: Casino, P]]	+	[[Category: Casino P]]
-	[[Category: Huesa, J]]	+	[[Category: Huesa J]]
-	[[Category: Pardo, I]]	+	[[Category: Pardo I]]
-	~~[[Category: Laccase]]~~	+
-	~~[[Category: Lactic acid bacteria]]~~	+
-	~~[[Category: Multicopper oxidase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 06:54, 17 March 2021

OCA — Wed, 17 Mar 2021 06:54:54 GMT

←Older revision		Revision as of 06:54, 17 March 2021
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	==Crystal structure of laccase from Pediococcus acidilactici Pp5930 (Hepes pH 7.5)==		==Crystal structure of laccase from Pediococcus acidilactici Pp5930 (Hepes pH 7.5)==
-	<StructureSection load='6z0k' size='340' side='right'caption='[[6z0k]]' scene=''>	+	<StructureSection load='6z0k' size='340' side='right'caption='[[6z0k]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6z0k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_acidilactici_7_4 Pediococcus acidilactici 7_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0K FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0k OCA], [https://pdbe.org/6z0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0k RCSB], [https://www.ebi.ac.uk/pdbsum/6z0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0k ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HMPREF9024_01129 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=563194 Pediococcus acidilactici 7_4])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0k OCA], [https://pdbe.org/6z0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0k RCSB], [https://www.ebi.ac.uk/pdbsum/6z0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0k ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Prokaryotic laccases are emergent biocatalysts. However, they have not been broadly found and characterized in bacterial organisms, especially in lactic acid bacteria. Recently, a prokaryotic laccase from the lactic acid bacterium Pediococcus acidilactici 5930, which can degrade biogenic amines, was discovered. Thus, our study aimed to shed light on laccases from lactic acid bacteria focusing on two Pediococcus laccases, P. acidilactici 5930 and Pediococcus pentosaceus 4816, which have provided valuable information on their biochemical activities on redox mediators and biogenic amines. Both laccases are able to oxidize canonical substrates as ABTS, ferrocyanide and 2,6-DMP, and non-conventional substrates as biogenic amines. With ABTS as a substrate, they prefer an acidic environment and show sigmoidal kinetic activity, and are rather thermostable. Moreover, this study has provided the first structural view of two lactic acid bacteria laccases, revealing new structural features not seen before in other well-studied laccases, but which seem characteristic for this group of bacteria. We believe that understanding the role of laccases in lactic acid bacteria will have an impact on their biotechnological applications and provide a framework for the development of engineered lactic acid bacteria with enhanced properties.
		+
		+	Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species.,Olmeda I, Casino P, Collins RE, Sendra R, Callejon S, Huesa J, Soares AS, Ferrer S, Pardo I Microb Biotechnol. 2021 Feb 26. doi: 10.1111/1751-7915.13751. PMID:33635570<ref>PMID:33635570</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6z0k" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Casino P]]	+	[[Category: Pediococcus acidilactici 7_4]]
-	[[Category: Huesa J]]	+	[[Category: Casino, P]]
-	[[Category: Pardo I]]	+	[[Category: Huesa, J]]
		+	[[Category: Pardo, I]]
		+	[[Category: Laccase]]
		+	[[Category: Lactic acid bacteria]]
		+	[[Category: Multicopper oxidase]]
		+	[[Category: Oxidoreductase]]

OCA at 17:15, 10 March 2021

OCA — Wed, 10 Mar 2021 17:15:30 GMT

←Older revision		Revision as of 17:15, 10 March 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 6z0k is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of laccase from Pediococcus acidilactici Pp5930 (Hepes pH 7.5)==
-		+	<StructureSection load='6z0k' size='340' side='right'caption='[[6z0k]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z0K FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z0k OCA], [https://pdbe.org/6z0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z0k RCSB], [https://www.ebi.ac.uk/pdbsum/6z0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z0k ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Casino P]]
		+	[[Category: Huesa J]]
		+	[[Category: Pardo I]]

OCA at 11:02, 8 July 2020

OCA — Wed, 08 Jul 2020 11:02:23 GMT

←Older revision		Revision as of 11:02, 8 July 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6z0k is ON HOLD	+	The entry 6z0k is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6z0k" [edit=sysop:move=sysop]

OCA — Wed, 20 May 2020 04:29:45 GMT

Protected "6z0k" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:29, 20 May 2020

OCA: New page: '''Unreleased structure''' The entry 6z0k is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 20 May 2020 04:29:44 GMT

New page: '''Unreleased structure''' The entry 6z0k is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6z0k is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]