OCA at 08:28, 7 December 2022

OCA — Wed, 07 Dec 2022 08:28:07 GMT

←Older revision		Revision as of 08:28, 7 December 2022
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-	====	+	==Structure of the human mitoribosome in the post translocation state bound to mtEF-G1==
-	<StructureSection load='7a5k' size='340' side='right'caption='[[7a5k]]' scene=''>	+	<StructureSection load='7a5k' size='340' side='right'caption='[[7a5k]], [[Resolution\|resolution]] 3.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7a5k]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A5K FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7a5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a5k OCA], [~~http~~://pdbe.org/7a5k PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7a5k RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7a5k PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7a5k ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GCP:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>GCP</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SPD:SPERMIDINE'>SPD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a5k OCA], [https://pdbe.org/7a5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a5k RCSB], [https://www.ebi.ac.uk/pdbsum/7a5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a5k ProSAT]</span></td></tr>
	</table>		</table>
		+	== Disease ==
		+	[https://www.uniprot.org/uniprot/EFGM_HUMAN EFGM_HUMAN] Hepatoencephalopathy due to combined oxidative phosphorylation defect type 1. The disease is caused by variants affecting the gene represented in this entry.
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/EFGM_HUMAN EFGM_HUMAN] Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis.[HAMAP-Rule:MF_03061]<ref>PMID:19716793</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The human mitochondrial ribosome (mitoribosome) and associated proteins regulate the synthesis of 13 essential subunits of the oxidative phosphorylation complexes. We report the discovery of a mitoribosome-associated quality control pathway that responds to interruptions during elongation, and we present structures at 3.1- to 3.3-angstrom resolution of mitoribosomal large subunits trapped during ribosome rescue. Release factor homolog C12orf65 (mtRF-R) and RNA binding protein C6orf203 (MTRES1) eject the nascent chain and peptidyl transfer RNA (tRNA), respectively, from stalled ribosomes. Recruitment of mitoribosome biogenesis factors to these quality control intermediates suggests additional roles for these factors during mitoribosome rescue. We also report related cryo-electron microscopy structures (3.7 to 4.4 angstrom resolution) of elongating mitoribosomes bound to tRNAs, nascent polypeptides, the guanosine triphosphatase elongation factors mtEF-Tu and mtEF-G1, and the Oxa1L translocase.
		+
		+	Elongational stalling activates mitoribosome-associated quality control.,Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V Science. 2020 Nov 27;370(6520):1105-1110. doi: 10.1126/science.abc7782. PMID:33243891<ref>PMID:33243891</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7a5k" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Chandrasekaran V]]
		+	[[Category: Desai N]]
		+	[[Category: Kazi R]]
		+	[[Category: Minczuk M]]
		+	[[Category: Ramakrishnan V]]
		+	[[Category: Yang H]]

OCA at 10:36, 24 December 2020

OCA — Thu, 24 Dec 2020 10:36:15 GMT

←Older revision		Revision as of 10:36, 24 December 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 7a5k ~~is ON HOLD~~	+	====
-		+	<StructureSection load='7a5k' size='340' side='right'caption='[[7a5k]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7a5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a5k OCA], [http://pdbe.org/7a5k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7a5k RCSB], [http://www.ebi.ac.uk/pdbsum/7a5k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7a5k ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 05:10, 25 November 2020

OCA — Wed, 25 Nov 2020 05:10:35 GMT

←Older revision		Revision as of 05:10, 25 November 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7a5k is ON HOLD ~~until sometime in the future~~	+	The entry 7a5k is ON HOLD

	Authors:		Authors:

OCA at 08:37, 23 September 2020

OCA — Wed, 23 Sep 2020 08:37:34 GMT

←Older revision		Revision as of 08:37, 23 September 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7a5k is ON HOLD	+	The entry 7a5k is ON HOLD until sometime in the future

	Authors:		Authors:

OCA: Protected "7a5k" [edit=sysop:move=sysop]

OCA — Wed, 26 Aug 2020 09:20:14 GMT

Protected "7a5k" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:20, 26 August 2020

OCA: New page: '''Unreleased structure''' The entry 7a5k is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 26 Aug 2020 09:20:12 GMT

New page: '''Unreleased structure''' The entry 7a5k is ON HOLD Authors: Description: Category: Unreleased Structures

New page