OCA at 06:14, 18 August 2021

OCA — Wed, 18 Aug 2021 06:14:54 GMT

←Older revision		Revision as of 06:14, 18 August 2021
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	==Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG from M. tuberculosis==		==Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG from M. tuberculosis==
-	<StructureSection load='7a7a' size='340' side='right'caption='[[7a7a]]' scene=''>	+	<StructureSection load='7a7a' size='340' side='right'caption='[[7a7a]], [[Resolution\|resolution]] 3.08Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A7A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7a7a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A7A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a7a OCA], [https://pdbe.org/7a7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a7a RCSB], [https://www.ebi.ac.uk/pdbsum/7a7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a7a ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">katG, ERS007661_00994, ERS013471_02729, ERS024276_01596, ERS075361_01376, ERS094182_01139, F6W99_00474, FRD82_12135 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a7a OCA], [https://pdbe.org/7a7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a7a RCSB], [https://www.ebi.ac.uk/pdbsum/7a7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a7a ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/A0A0D5ZBI4_MYCTX A0A0D5ZBI4_MYCTX]] Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.[HAMAP-Rule:MF_01961]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Resolution advances in cryoelectron microscopy (cryo-EM) now offer the possibility to visualize structural effects of naturally occurring resistance mutations in proteins and also of understanding the binding mechanisms of small drug molecules. In Mycobacterium tuberculosis the multifunctional heme enzyme KatG is indispensable for activation of isoniazid (INH), a first-line pro-drug for treatment of tuberculosis. We present a cryo-EM methodology for structural and functional characterization of KatG and INH resistance variants. The cryo-EM structure of the 161 kDa KatG dimer in the presence of INH is reported to 2.7 A resolution allowing the observation of potential INH binding sites. In addition, cryo-EM structures of two INH resistance variants, identified from clinical isolates, W107R and T275P, are reported. In combination with electronic absorbance spectroscopy our cryo-EM approach reveals how these resistance variants cause disorder in the heme environment preventing heme uptake and retention, providing insight into INH resistance.
		+
		+	Using cryo-EM to understand antimycobacterial resistance in the catalase-peroxidase (KatG) from Mycobacterium tuberculosis.,Munir A, Wilson MT, Hardwick SW, Chirgadze DY, Worrall JAR, Blundell TL, Chaplin AK Structure. 2021 Jan 4. pii: S0969-2126(20)30475-5. doi:, 10.1016/j.str.2020.12.008. PMID:33444527<ref>PMID:33444527</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7a7a" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Catalase 3D structures\|Catalase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Catalase peroxidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Blundell TL]]	+	[[Category: Blundell, T L]]
-	[[Category: Chaplin AK]]	+	[[Category: Chaplin, A K]]
-	[[Category: Munir A]]	+	[[Category: Munir, A]]
		+	[[Category: Heme]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Peroxidase-catalase]]

OCA at 07:56, 27 January 2021

OCA — Wed, 27 Jan 2021 07:56:07 GMT

←Older revision		Revision as of 07:56, 27 January 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 7a7a is ON HOLD~~	+	==Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG from M. tuberculosis==
-		+	<StructureSection load='7a7a' size='340' side='right'caption='[[7a7a]]' scene=''>
-	~~Authors: Blundell, T.L., Chaplin, A.K., Munir, A.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A7A FirstGlance]. <br>
-	~~Description:~~ Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG from M. tuberculosis	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a7a OCA], [https://pdbe.org/7a7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a7a RCSB], [https://www.ebi.ac.uk/pdbsum/7a7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a7a ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Blundell~~, T.L~~]]	+	__TOC__
-	[[Category: ~~Munir, A~~]]	+	</StructureSection>
-	[[Category: ~~Chaplin,~~ A.K]]	+	[[Category: Large Structures]]
		+	[[Category: Blundell TL]]
		+	[[Category: Chaplin AK]]
		+	[[Category: Munir A]]

OCA: Protected "7a7a" [edit=sysop:move=sysop]

OCA — Wed, 02 Sep 2020 05:07:44 GMT

Protected "7a7a" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:07, 2 September 2020

OCA: New page: '''Unreleased structure''' The entry 7a7a is ON HOLD Authors: Blundell, T.L., Chaplin, A.K., Munir, A. Description: Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG ...

OCA — Wed, 02 Sep 2020 05:07:43 GMT

New page: '''Unreleased structure''' The entry 7a7a is ON HOLD Authors: Blundell, T.L., Chaplin, A.K., Munir, A. Description: Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG ...

New page

'''Unreleased structure'''

The entry 7a7a is ON HOLD

Authors: Blundell, T.L., Chaplin, A.K., Munir, A.

Description: Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG from M. tuberculosis
[[Category: Unreleased Structures]]
[[Category: Blundell, T.L]]
[[Category: Munir, A]]
[[Category: Chaplin, A.K]]

7a7a - Revision history

OCA at 06:14, 18 August 2021

OCA at 07:56, 27 January 2021

OCA: Protected "7a7a" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7a7a is ON HOLD Authors: Blundell, T.L., Chaplin, A.K., Munir, A. Description: Cryo-EM structure of W107R after heme uptake (2heme molecules) KatG ...