7a9i - Revision history

OCA at 07:43, 1 May 2024

OCA — Wed, 01 May 2024 07:43:55 GMT

←Older revision		Revision as of 07:43, 1 May 2024
Line 3:		Line 3:
	<StructureSection load='7a9i' size='340' side='right'caption='[[7a9i]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='7a9i' size='340' side='right'caption='[[7a9i]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7a9i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"erwinia_carotovora_subsp._brasiliensis"_duarte_et_al._2004 "erwinia carotovora subsp. brasiliensis" duarte et al. 2004~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7a9i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_brasiliense Pectobacterium brasiliense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=R4Z:6-ethyl-1-oxidanylidene-indene-4-carboxylic+acid'>R4Z</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cfl, KCO_08370, KU74_07105 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=180957 "Erwinia carotovora subsp. brasiliensis" Duarte et al. 2004])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=R4Z:6-ethyl-1-oxidanylidene-indene-4-carboxylic+acid'>R4Z</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9i OCA], [https://pdbe.org/7a9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9i RCSB], [https://www.ebi.ac.uk/pdbsum/7a9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9i OCA], [https://pdbe.org/7a9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9i RCSB], [https://www.ebi.ac.uk/pdbsum/7a9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9i ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/M4GWN4_9GAMM M4GWN4_9GAMM]
-	Coronatine and related bacterial phytotoxins are mimics of the hormone jasmonyl-L-isoleucine (JA-Ile), which mediates physiologically important plant signalling pathways(1-4). Coronatine-like phytotoxins disrupt these essential pathways and have potential in the development of safer, more selective herbicides. Although the biosynthesis of coronatine has been investigated previously, the nature of the enzyme that catalyses the crucial coupling of coronafacic acid to amino acids remains unknown(1,2). Here we characterize a family of enzymes, coronafacic acid ligases (CfaLs), and resolve their structures. We found that CfaL can also produce JA-Ile, despite low similarity with the Jar1 enzyme that is responsible for ligation of JA and L-Ile in plants(5). This suggests that Jar1 and CfaL evolved independently to catalyse similar reactions-Jar1 producing a compound essential for plant development(4,5), and the bacterial ligases producing analogues toxic to plants. We further demonstrate how CfaL enzymes can be used to synthesize a diverse array of amides, obviating the need for protecting groups. Highly selective kinetic resolutions of racemic donor or acceptor substrates were achieved, affording homochiral products. We also used structure-guided mutagenesis to engineer improved CfaL variants. Together, these results show that CfaLs can deliver a wide range of amides for agrochemical, pharmaceutical and other applications.	+
-		+
-	~~Discovery, characterization and engineering of ligases for amide synthesis.,Winn M, Rowlinson M, Wang F, Bering L, Francis D, Levy C, Micklefield J Nature. 2021 May;593(7859)~~:~~391-398. doi: 10.1038~~/~~s41586-021-03447-w. Epub 2021, May 19. PMID:34012085<ref>PMID:34012085<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 7a9i" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references~~/>	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Erwinia carotovora subsp. brasiliensis duarte et al. 2004]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Levy, C W~~]]	+	[[Category: Pectobacterium brasiliense]]
-	[[Category: ~~Ligase~~]]	+	[[Category: Levy CW]]

OCA at 14:48, 2 June 2021

OCA — Wed, 02 Jun 2021 14:48:07 GMT

←Older revision		Revision as of 14:48, 2 June 2021
Line 1:		Line 1:

	==Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense==		==Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense==
-	<StructureSection load='7a9i' size='340' side='right'caption='[[7a9i]]' scene=''>	+	<StructureSection load='7a9i' size='340' side='right'caption='[[7a9i]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7a9i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"erwinia_carotovora_subsp._brasiliensis"_duarte_et_al._2004 "erwinia carotovora subsp. brasiliensis" duarte et al. 2004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9I FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9i OCA], [https://pdbe.org/7a9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9i RCSB], [https://www.ebi.ac.uk/pdbsum/7a9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9i ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=R4Z:6-ethyl-1-oxidanylidene-indene-4-carboxylic+acid'>R4Z</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cfl, KCO_08370, KU74_07105 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=180957 "Erwinia carotovora subsp. brasiliensis" Duarte et al. 2004])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9i OCA], [https://pdbe.org/7a9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9i RCSB], [https://www.ebi.ac.uk/pdbsum/7a9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9i ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Coronatine and related bacterial phytotoxins are mimics of the hormone jasmonyl-L-isoleucine (JA-Ile), which mediates physiologically important plant signalling pathways(1-4). Coronatine-like phytotoxins disrupt these essential pathways and have potential in the development of safer, more selective herbicides. Although the biosynthesis of coronatine has been investigated previously, the nature of the enzyme that catalyses the crucial coupling of coronafacic acid to amino acids remains unknown(1,2). Here we characterize a family of enzymes, coronafacic acid ligases (CfaLs), and resolve their structures. We found that CfaL can also produce JA-Ile, despite low similarity with the Jar1 enzyme that is responsible for ligation of JA and L-Ile in plants(5). This suggests that Jar1 and CfaL evolved independently to catalyse similar reactions-Jar1 producing a compound essential for plant development(4,5), and the bacterial ligases producing analogues toxic to plants. We further demonstrate how CfaL enzymes can be used to synthesize a diverse array of amides, obviating the need for protecting groups. Highly selective kinetic resolutions of racemic donor or acceptor substrates were achieved, affording homochiral products. We also used structure-guided mutagenesis to engineer improved CfaL variants. Together, these results show that CfaLs can deliver a wide range of amides for agrochemical, pharmaceutical and other applications.
		+
		+	Discovery, characterization and engineering of ligases for amide synthesis.,Winn M, Rowlinson M, Wang F, Bering L, Francis D, Levy C, Micklefield J Nature. 2021 May;593(7859):391-398. doi: 10.1038/s41586-021-03447-w. Epub 2021, May 19. PMID:34012085<ref>PMID:34012085</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7a9i" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Erwinia carotovora subsp. brasiliensis duarte et al. 2004]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Levy CW]]	+	[[Category: Levy, C W]]
		+	[[Category: Ligase]]

OCA at 08:52, 5 May 2021

OCA — Wed, 05 May 2021 08:52:00 GMT

←Older revision		Revision as of 08:52, 5 May 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 7a9i is ON HOLD until Paper Publication~~	+	==Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense==
-		+	<StructureSection load='7a9i' size='340' side='right'caption='[[7a9i]]' scene=''>
-	~~Authors: Levy, C.W.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9I FirstGlance]. <br>
-	~~Description:~~ Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9i OCA], [https://pdbe.org/7a9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9i RCSB], [https://www.ebi.ac.uk/pdbsum/7a9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9i ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Levy~~, C.W~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Levy CW]]

OCA at 06:39, 16 September 2020

OCA — Wed, 16 Sep 2020 06:39:32 GMT

←Older revision		Revision as of 06:39, 16 September 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7a9i is ON HOLD	+	The entry 7a9i is ON HOLD until Paper Publication

	Authors: Levy, C.W.		Authors: Levy, C.W.

OCA: Protected "7a9i" [edit=sysop:move=sysop]

OCA — Wed, 09 Sep 2020 07:20:14 GMT

Protected "7a9i" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:20, 9 September 2020

OCA: New page: '''Unreleased structure''' The entry 7a9i is ON HOLD Authors: Levy, C.W. Description: Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense [[Category: Unrelease...

OCA — Wed, 09 Sep 2020 07:20:12 GMT

New page: '''Unreleased structure''' The entry 7a9i is ON HOLD Authors: Levy, C.W. Description: Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense [[Category: Unrelease...

New page

'''Unreleased structure'''

The entry 7a9i is ON HOLD

Authors: Levy, C.W.

Description: Crystal structure of Coronafacic Acid Ligase from Pectobacterium brasiliense
[[Category: Unreleased Structures]]
[[Category: Levy, C.W]]