7ays - Revision history

OCA at 10:30, 4 August 2021

OCA — Wed, 04 Aug 2021 10:30:59 GMT

←Older revision		Revision as of 10:30, 4 August 2021
Line 1:		Line 1:

	==Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room temperature==		==Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room temperature==
-	<StructureSection load='7ays' size='340' side='right'caption='[[7ays]]' scene=''>	+	<StructureSection load='7ays' size='340' side='right'caption='[[7ays]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AYS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=7AYS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ays]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7AYS FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7ays FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ays OCA], [~~http~~://pdbe.org/7ays PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7ays RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7ays PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7ays ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ays FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ays OCA], [https://pdbe.org/7ays PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ays RCSB], [https://www.ebi.ac.uk/pdbsum/7ays PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ays ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein dynamics contribute to protein function on different time scales. Ultrafast X-ray diffraction snapshots can visualize the location and amplitude of atom displacements after perturbation. Since amplitudes of ultrafast motions are small, high-quality X-ray diffraction data is necessary for detection. Diffraction from bovine trypsin crystals using single femtosecond X-ray pulses was recorded at FemtoMAX, which is a versatile beamline of the MAX IV synchrotron. The time-over-threshold detection made it possible that single photons are distinguishable even under short-pulse low-repetition-rate conditions. The diffraction data quality from FemtoMAX beamline enables atomic resolution investigation of protein structures. This evaluation is based on the shape of the Wilson plot, cumulative intensity distribution compared with theoretical distribution, I/sigma, Rmerge/Rmeas and CC1/2 statistics versus resolution. The FemtoMAX beamline provides an interesting alternative to X-ray free-electron lasers when studying reversible processes in protein crystals.
		+
		+	High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection.,Jensen M, Ahlberg Gagner V, Cabello Sanchez J, Bengtsson AUJ, Ekstrom JC, Bjorg Ulfarsdottir T, Garcia-Bonete MJ, Jurgilaitis A, Kroon D, Pham VT, Checcia S, Coudert-Alteirac H, Schewa S, Rossle M, Rodilla H, Stake J, Zhaunerchyk V, Larsson J, Katona G J Synchrotron Radiat. 2021 Jan 1;28(Pt 1):64-70. doi: 10.1107/S1600577520014599. , Epub 2021 Jan 1. PMID:33399553<ref>PMID:33399553</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ays" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bos taurus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Jensen M]]	+	[[Category: Trypsin]]
		+	[[Category: Jensen, M]]
		+	[[Category: Hydrolase]]
		+	[[Category: Serine protease]]

OCA at 08:13, 20 January 2021

OCA — Wed, 20 Jan 2021 08:13:16 GMT

←Older revision		Revision as of 08:13, 20 January 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 7ays is ON HOLD until Paper Publication~~	+	==Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room temperature==
-		+	<StructureSection load='7ays' size='340' side='right'caption='[[7ays]]' scene=''>
-	~~Authors: Jensen, M.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7AYS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7AYS FirstGlance]. <br>
-	~~Description:~~ Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room temperature	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7ays FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ays OCA], [http://pdbe.org/7ays PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7ays RCSB], [http://www.ebi.ac.uk/pdbsum/7ays PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7ays ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Jensen, M]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Jensen M]]

OCA at 10:56, 16 December 2020

OCA — Wed, 16 Dec 2020 10:56:51 GMT

←Older revision		Revision as of 10:56, 16 December 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ays is ON HOLD	+	The entry 7ays is ON HOLD until Paper Publication

	Authors: Jensen, M.		Authors: Jensen, M.

OCA: Protected "7ays" [edit=sysop:move=sysop]

OCA — Wed, 18 Nov 2020 07:58:46 GMT

Protected "7ays" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:58, 18 November 2020

OCA: New page: '''Unreleased structure''' The entry 7ays is ON HOLD Authors: Jensen, M. Description: Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room t...

OCA — Wed, 18 Nov 2020 07:58:44 GMT

New page: '''Unreleased structure''' The entry 7ays is ON HOLD Authors: Jensen, M. Description: Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room t...

New page

'''Unreleased structure'''

The entry 7ays is ON HOLD

Authors: Jensen, M.

Description: Structure of bovine trypsin determined from single femtosecond snapshots per orientation at room temperature
[[Category: Unreleased Structures]]
[[Category: Jensen, M]]