OCA at 15:26, 29 November 2023

OCA — Wed, 29 Nov 2023 15:26:50 GMT

←Older revision		Revision as of 15:26, 29 November 2023
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-	====	+	==Crystal Structure of Spindlin1 bound to H3(K4me3-K9me3) peptide==
-	<StructureSection load='7bqz' size='340' side='right'caption='[[7bqz]]' scene=''>	+	<StructureSection load='7bqz' size='340' side='right'caption='[[7bqz]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7bqz]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BQZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BQZ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7bqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bqz OCA], [~~http~~://pdbe.org/7bqz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7bqz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7bqz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7bqz ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.101Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bqz OCA], [https://pdbe.org/7bqz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bqz RCSB], [https://www.ebi.ac.uk/pdbsum/7bqz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bqz ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SPIN1_HUMAN SPIN1_HUMAN] May play a role in cell-cycle regulation during the transition from gamete to embryo (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Histone recognition by 'reader' modules serves as a fundamental mechanism in epigenetic regulation. Previous studies have shown that Spindlin1 is a reader of histone H3K4me3 as well as "K4me3-R8me2a", and promotes transcription of rDNA or Wnt/TCF4 target genes. Here we show that Spindlin1 also acts as a potent reader of histone H3 "K4me3-K9me3/2" bivalent methylation pattern. Calorimetric titration revealed a binding affinity of 16 nM between Spindlin1 and H3 "K4me3-K9me3" peptide, which is one to three orders of magnitude stronger than most other histone readout events at peptide level. Structural studies revealed concurrent recognition of H3K4me3 and H3K9me3/2 by aromatic pockets 2 and 1 of Spindlin1, respectively. Epigenomic profiling studies showed that Spindlin1 colocalizes with both H3K4me3 and H3K9me3 peaks in a subset of genes enriched in biological processes of transcription and its regulation. Moreover, the distribution of Spindlin1 peaks is primarily associated with H3K4me3 but not H3K9me3, which suggests that Spindlin1 is a downstream effector of H3K4me3 generated in heterochromatic regions. Collectively, our work calls attention to an intriguing function of Spindlin1 as a potent H3 "K4me3-K9me3/2" bivalent mark reader, thereby balancing gene expression and silencing in H3K9me3/2-enriched regions.
		+
		+	Molecular basis for histone H3 "K4me3-K9me3/2" methylation pattern readout by Spindlin1.,Zhao F, Liu Y, Su X, Lee JE, Song Y, Wang D, Ge K, Gao J, Zhang MQ, Li H J Biol Chem. 2020 Sep 29. pii: RA120.013649. doi: 10.1074/jbc.RA120.013649. PMID:32994220<ref>PMID:32994220</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7bqz" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Spindlin\|Spindlin]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Li H]]
		+	[[Category: Zhao F]]

OCA at 05:51, 14 October 2020

OCA — Wed, 14 Oct 2020 05:51:50 GMT

←Older revision		Revision as of 05:51, 14 October 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 7bqz ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7bqz' size='340' side='right'caption='[[7bqz]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7bqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bqz OCA], [http://pdbe.org/7bqz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7bqz RCSB], [http://www.ebi.ac.uk/pdbsum/7bqz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7bqz ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 04:32, 7 October 2020

OCA — Wed, 07 Oct 2020 04:32:14 GMT

←Older revision		Revision as of 04:32, 7 October 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7bqz is ON HOLD	+	The entry 7bqz is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7bqz" [edit=sysop:move=sysop]

OCA — Wed, 01 Apr 2020 07:56:25 GMT

Protected "7bqz" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:56, 1 April 2020

OCA: New page: '''Unreleased structure''' The entry 7bqz is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 01 Apr 2020 07:56:23 GMT

New page: '''Unreleased structure''' The entry 7bqz is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7bqz is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7bqz - Revision history

OCA at 15:26, 29 November 2023

OCA at 05:51, 14 October 2020

OCA at 04:32, 7 October 2020

OCA: Protected "7bqz" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7bqz is ON HOLD Authors: Description: Category: Unreleased Structures