OCA at 15:36, 29 November 2023

OCA — Wed, 29 Nov 2023 15:36:36 GMT

←Older revision		Revision as of 15:36, 29 November 2023
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-	====	+	==Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex==
-	<StructureSection load='7bv6' size='340' side='right'caption='[[7bv6]]' scene=''>	+	<StructureSection load='7bv6' size='340' side='right'caption='[[7bv6]], [[Resolution\|resolution]] 3.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7bv6]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BV6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BV6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7bv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bv6 OCA], [~~http~~://pdbe.org/7bv6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7bv6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7bv6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7bv6 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.05Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7bv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bv6 OCA], [https://pdbe.org/7bv6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7bv6 RCSB], [https://www.ebi.ac.uk/pdbsum/7bv6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7bv6 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/VAMP8_HUMAN VAMP8_HUMAN] SNAREs, Soluble N-ethylmaleimide-sensitive factor-attachment protein receptors, are essential proteins for fusion of cellular membranes. SNAREs localized on opposing membranes assemble to form a trans-SNARE complex, an extended, parallel four alpha-helical bundle that drives membrane fusion. VAMP8 is a SNARE involved in autophagy through the direct control of autophagosome membrane fusion with the lysososome membrane. Also required for dense-granule secretion in platelets. Plays also a role in regulated enzyme secretion in pancreatic acinar cells. Involved in the abscission of the midbody during cell division, which leads to completely separate daughter cells. Involved in the homotypic fusion of early and late endosomes.<ref>PMID:12130530</ref> <ref>PMID:23217709</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Syntaxin17, a key autophagosomal N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) protein, can associate with ATG8 family proteins SNAP29 and VAMP8 to facilitate the membrane fusion process between the double-membraned autophagosome and single-membraned lysosome in mammalian macroautophagy. However, the inherent properties of Syntaxin17 and the mechanistic basis underlying the interactions of Syntaxin17 with its binding proteins remain largely unknown. Here, using biochemical, NMR, and structural approaches, we systemically characterized Syntaxin17 as well as its interactions with ATG8 family proteins, SNAP29 and VAMP8. We discovered that Syntaxin17 alone adopts an autoinhibited conformation mediated by a direct interaction between its Habc domain and the Qa-SNARE motif. In addition, we revealed that the Qa-SNARE region of Syntaxin17 contains one LC3-interacting region (LIR) motif, which preferentially binds to GABARAP subfamily members. Importantly, the GABARAP binding of Syntaxin17 can release its autoinhibited state. The determined crystal structure of the Syntaxin17 LIR-GABARAP complex not only provides mechanistic insights into the interaction between Syntaxin17 and GABARAP but also reveals an unconventional LIR motif with a C-terminally extended 310 helix for selectively binding to ATG8 family proteins. Finally, we also elucidated structural arrangements of the autophagic Syntaxin17-SNAP29-VAMP8 SNARE core complex, and uncovered its conserved biochemical and structural characteristics common to all other SNAREs. In all, our findings reveal three distinct states of Syntaxin17, and provide mechanistic insights into the Syntaxin17-mediated autophagosome-lysosome fusion process.
		+
		+	Decoding three distinct states of the Syntaxin17 SNARE motif in mediating autophagosome-lysosome fusion.,Li Y, Cheng X, Li M, Wang Y, Fu T, Zhou Z, Wang Y, Gong X, Xu X, Liu J, Pan L Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21391-21402. doi:, 10.1073/pnas.2006997117. Epub 2020 Aug 19. PMID:32817423<ref>PMID:32817423</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7bv6" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Syntaxin 3D structures\|Syntaxin 3D structures]]
		+	*[[Vesicle-associated membrane protein\|Vesicle-associated membrane protein]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Li Y]]
		+	[[Category: Pan LF]]

OCA at 06:54, 2 September 2020

OCA — Wed, 02 Sep 2020 06:54:21 GMT

←Older revision		Revision as of 06:54, 2 September 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7bv6 ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7bv6' size='340' side='right'caption='[[7bv6]]' scene=''>
-	~~Authors~~: ~~Li, Y~~.~~, Pan, L~~.F.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description: Crystal structure of~~ the ~~autophagic STX17~~/~~SNAP29~~/~~VAMP8 SNARE complex~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7bv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7bv6 OCA], [http://pdbe.org/7bv6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7bv6 RCSB], [http://www.ebi.ac.uk/pdbsum/7bv6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7bv6 ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Pan~~, L.F]]	+	__TOC__
-	[[Category: ~~Li, Y~~]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 05:24, 3 June 2020

OCA — Wed, 03 Jun 2020 05:24:05 GMT

←Older revision		Revision as of 05:24, 3 June 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7bv6 is ON HOLD	+	The entry 7bv6 is ON HOLD until Paper Publication

	Authors: Li, Y., Pan, L.F.		Authors: Li, Y., Pan, L.F.

OCA: Protected "7bv6" [edit=sysop:move=sysop]

OCA — Wed, 15 Apr 2020 05:45:05 GMT

Protected "7bv6" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:45, 15 April 2020

OCA: New page: '''Unreleased structure''' The entry 7bv6 is ON HOLD Authors: Li, Y., Pan, L.F. Description: Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex [[Category: Unreleased...

OCA — Wed, 15 Apr 2020 05:45:04 GMT

New page: '''Unreleased structure''' The entry 7bv6 is ON HOLD Authors: Li, Y., Pan, L.F. Description: Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex [[Category: Unreleased...

New page

'''Unreleased structure'''

The entry 7bv6 is ON HOLD

Authors: Li, Y., Pan, L.F.

Description: Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex
[[Category: Unreleased Structures]]
[[Category: Pan, L.F]]
[[Category: Li, Y]]

7bv6 - Revision history

OCA at 15:36, 29 November 2023

OCA at 06:54, 2 September 2020

OCA at 05:24, 3 June 2020

OCA: Protected "7bv6" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7bv6 is ON HOLD Authors: Li, Y., Pan, L.F. Description: Crystal structure of the autophagic STX17/SNAP29/VAMP8 SNARE complex [[Category: Unreleased...