7cnr - Revision history

OCA at 19:30, 29 May 2024

OCA — Wed, 29 May 2024 19:30:42 GMT

←Older revision		Revision as of 19:30, 29 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7cnr]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CNR FirstGlance]. <br>		<table><tr><td colspan='2'>[[7cnr]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CNR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.39Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cnr OCA], [https://pdbe.org/7cnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cnr RCSB], [https://www.ebi.ac.uk/pdbsum/7cnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cnr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cnr OCA], [https://pdbe.org/7cnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cnr RCSB], [https://www.ebi.ac.uk/pdbsum/7cnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cnr ProSAT]</span></td></tr>
	</table>		</table>

OCA at 09:12, 28 December 2022

OCA — Wed, 28 Dec 2022 09:12:50 GMT

←Older revision		Revision as of 09:12, 28 December 2022
Line 1:		Line 1:

-	====	+	==Crystal structure of Thermococcus kodakaraensis aconitase X (apo-form)==
-	<StructureSection load='7cnr' size='340' side='right'caption='[[7cnr]]' scene=''>	+	<StructureSection load='7cnr' size='340' side='right'caption='[[7cnr]], [[Resolution\|resolution]] 3.39Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7cnr]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CNR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cnr OCA], [https://pdbe.org/7cnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cnr RCSB], [https://www.ebi.ac.uk/pdbsum/7cnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cnr ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F3S:FE3-S4+CLUSTER'>F3S</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cnr OCA], [https://pdbe.org/7cnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cnr RCSB], [https://www.ebi.ac.uk/pdbsum/7cnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cnr ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5JGJ6_THEKO Q5JGJ6_THEKO]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Aconitase superfamily members catalyze the homologous isomerization of specific substrates by sequential dehydration and hydration and contain a [4Fe-4S] cluster. However, monomeric and heterodimeric types of function unknown aconitase X (AcnX) have recently been characterized as a cis-3-hydroxy-L-proline dehydratase (AcnX(Type-I)) and mevalonate 5-phosphate dehydratase (AcnX(Type-II)), respectively. We herein elucidated the crystal structures of AcnX(Type-I) from Agrobacterium tumefaciens (AtAcnX) and AcnX(Type-II) from Thermococcus kodakarensis (TkAcnX) without a ligand and in complex with substrates. AtAcnX and TkAcnX contained the [2Fe-2S] and [3Fe-4S] clusters, respectively, conforming to UV and EPR spectroscopy analyses. The binding sites of the [Fe-S] cluster and substrate were clearlydifferent from those that were completely conserved in other aconitase enzymes; however, theoverall structural frameworks and locations of active sites were partially similar to each other.These results provide novel insights into the evolutionary scenario of the aconitase superfamilybased on the recruitment hypothesis.
		+
		+	Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.,Watanabe S, Murase Y, Watanabe Y, Sakurai Y, Tajima K Commun Biol. 2021 Jun 7;4(1):687. doi: 10.1038/s42003-021-02147-5. PMID:34099860<ref>PMID:34099860</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7cnr" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Aconitase 3D structures\|Aconitase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Thermococcus kodakarensis KOD1]]
		+	[[Category: Murase Y]]
		+	[[Category: Watanabe S]]
		+	[[Category: Watanabe Y]]

OCA at 14:45, 17 June 2021

OCA — Thu, 17 Jun 2021 14:45:49 GMT

←Older revision		Revision as of 14:45, 17 June 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7cnr ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7cnr' size='340' side='right'caption='[[7cnr]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cnr OCA], [https://pdbe.org/7cnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cnr RCSB], [https://www.ebi.ac.uk/pdbsum/7cnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cnr ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 04:07, 14 October 2020

OCA — Wed, 14 Oct 2020 04:07:38 GMT

←Older revision		Revision as of 04:07, 14 October 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7cnr is ON HOLD	+	The entry 7cnr is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7cnr" [edit=sysop:move=sysop]

OCA — Wed, 12 Aug 2020 08:21:51 GMT

Protected "7cnr" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:21, 12 August 2020

OCA: New page: '''Unreleased structure''' The entry 7cnr is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 12 Aug 2020 08:21:50 GMT

New page: '''Unreleased structure''' The entry 7cnr is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7cnr is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]