OCA at 16:13, 29 November 2023

OCA — Wed, 29 Nov 2023 16:13:04 GMT

←Older revision		Revision as of 16:13, 29 November 2023
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-	====	+	==353 bp di-nucleosome harboring cohesive DNA termini with linker histone H1.0==
-	<StructureSection load='7cow' size='340' side='right'caption='[[7cow]]' scene=''>	+	<StructureSection load='7cow' size='340' side='right'caption='[[7cow]], [[Resolution\|resolution]] 2.86Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7cow]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Other_sequences Other sequences]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7COW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7COW FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cow FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cow OCA], [https://pdbe.org/7cow PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cow RCSB], [https://www.ebi.ac.uk/pdbsum/7cow PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cow ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.86Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cow FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cow OCA], [https://pdbe.org/7cow PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cow RCSB], [https://www.ebi.ac.uk/pdbsum/7cow PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cow ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/H10_HUMAN H10_HUMAN] Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures. The H1F0 histones are found in cells that are in terminal stages of differentiation or that have low rates of cell division.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Structural characterization of chromatin is challenging due to conformational and compositional heterogeneity in vivo and dynamic properties that limit achievable resolution in vitro. Although the maximum resolution for solving structures of large macromolecular assemblies by electron microscopy has recently undergone profound increases, X-ray crystallographic approaches may still offer advantages for certain systems. One such system is compact chromatin, wherein the crystalline state recapitulates the crowded molecular environment within the nucleus. Here we show that nucleosomal constructs with cohesive-ended DNA can be designed that assemble into different types of circular configurations or continuous fibers extending throughout crystals. We demonstrate the utility of the method for characterizing nucleosome compaction and linker histone binding at near-atomic resolution but also advance its application for tackling further problems in chromatin structural biology and for generating novel types of DNA nanostructures. We provide a library of cohesive-ended DNA fragment expression constructs and a strategy for engineering DNA-based nanomaterials with a seemingly vast potential variety of architectures and histone chemistries.
		+
		+	Engineering nucleosomes for generating diverse chromatin assemblies.,Adhireksan Z, Sharma D, Lee PL, Bao Q, Padavattan S, Shum WK, Davey GE, Davey CA Nucleic Acids Res. 2021 May 21;49(9):e52. doi: 10.1093/nar/gkab070. PMID:33590100<ref>PMID:33590100</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7cow" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Histone 3D structures\|Histone 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Z~~-disk~~]]	+	[[Category: Other sequences]]
		+	[[Category: Adhireksan Z]]
		+	[[Category: Davey CA]]
		+	[[Category: Lee PL]]
		+	[[Category: Sharma D]]

OCA at 06:05, 11 August 2021

OCA — Wed, 11 Aug 2021 06:05:44 GMT

←Older revision		Revision as of 06:05, 11 August 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7cow ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7cow' size='340' side='right'caption='[[7cow]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cow FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cow OCA], [https://pdbe.org/7cow PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cow RCSB], [https://www.ebi.ac.uk/pdbsum/7cow PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cow ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 09:21, 26 August 2020

OCA — Wed, 26 Aug 2020 09:21:43 GMT

←Older revision		Revision as of 09:21, 26 August 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7cow is ON HOLD	+	The entry 7cow is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7cow" [edit=sysop:move=sysop]

OCA — Wed, 12 Aug 2020 08:24:36 GMT

Protected "7cow" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:24, 12 August 2020

OCA: New page: '''Unreleased structure''' The entry 7cow is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 12 Aug 2020 08:24:35 GMT

New page: '''Unreleased structure''' The entry 7cow is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7cow is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7cow - Revision history

OCA at 16:13, 29 November 2023

OCA at 06:05, 11 August 2021

OCA at 09:21, 26 August 2020

OCA: Protected "7cow" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7cow is ON HOLD Authors: Description: Category: Unreleased Structures