OCA at 16:20, 29 November 2023

OCA — Wed, 29 Nov 2023 16:20:32 GMT

←Older revision		Revision as of 16:20, 29 November 2023
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	==Crystal structure of a second cysteine-pair mutant (V110C-I197C) of a bacterial bile acid transporter before disulfide bond formation==		==Crystal structure of a second cysteine-pair mutant (V110C-I197C) of a bacterial bile acid transporter before disulfide bond formation==
-	<StructureSection load='7cyk' size='340' side='right'caption='[[7cyk]]' scene=''>	+	<StructureSection load='7cyk' size='340' side='right'caption='[[7cyk]], [[Resolution\|resolution]] 2.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CYK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=7CYK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7cyk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_frederiksenii Yersinia frederiksenii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CYK FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7cyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cyk OCA], [~~http~~://pdbe.org/7cyk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7cyk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7cyk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7cyk ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.785Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cyk OCA], [https://pdbe.org/7cyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cyk RCSB], [https://www.ebi.ac.uk/pdbsum/7cyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cyk ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A380PV03_YERFR A0A380PV03_YERFR]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Apical sodium-dependent bile acid transporter (ASBT) mediates the uptake of bile acids from the ileum lumen into enterocytes and presents a potential target for the treatment of several metabolic diseases, including type 2 diabetes. It has been proposed that the underlying mechanism for transport by ASBT is an elevator-style alternating-access model, which was deduced mainly by comparing high-resolution structures of two bacterial ASBT homologs (ASBTNM from Neisseria meningitides and ASBTYf from Yersinia frederiksenii) in different conformations. However, one important issue is that the only outward-facing structure (PDB entry 4n7x) was obtained with an Na(+)-binding site mutant of ASBTYf, which severely cripples its transport function, and therefore the physiological relevance of the conformation in PDB entry 4n7x requires further careful evaluation. Here, another crystal structure is reported of ASBTYf that was captured in a state closely resembling the conformation in PDB entry 4n7x using an engineered disulfide bridge. The introduced cysteine mutations avoided any proposed Na(+)- or substrate-binding residues, and the resulting mutant retained both structural and functional integrity and behaved similarly to wild-type ASBTYf. These data support the hypothesis that the PDB entry 4n7x-like structure represents a functional outward-facing conformation of ASBTYf in its transport cycle.
		+
		+	An engineered disulfide bridge traps and validates an outward-facing conformation in a bile acid transporter.,Wang X, Lyu Y, Ji Y, Sun Z, Zhou X Acta Crystallogr D Struct Biol. 2021 Jan 1;77(Pt 1):108-116. doi:, 10.1107/S205979832001517X. Epub 2021 Jan 1. PMID:33404530<ref>PMID:33404530</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7cyk" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Symporter 3D structures\|Symporter 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Yersinia frederiksenii]]
	[[Category: Ji Y]]		[[Category: Ji Y]]
	[[Category: Lyu Y]]		[[Category: Lyu Y]]

OCA at 05:55, 20 January 2021

OCA — Wed, 20 Jan 2021 05:55:33 GMT

←Older revision		Revision as of 05:55, 20 January 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7cyk is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of a second cysteine-pair mutant (V110C-I197C) of a bacterial bile acid transporter before disulfide bond formation==
-		+	<StructureSection load='7cyk' size='340' side='right'caption='[[7cyk]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CYK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7CYK FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7cyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cyk OCA], [http://pdbe.org/7cyk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7cyk RCSB], [http://www.ebi.ac.uk/pdbsum/7cyk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7cyk ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Ji Y]]
		+	[[Category: Lyu Y]]
		+	[[Category: Sun Z]]
		+	[[Category: Wang X]]
		+	[[Category: Zhou X]]

OCA at 06:52, 16 September 2020

OCA — Wed, 16 Sep 2020 06:52:22 GMT

←Older revision		Revision as of 06:52, 16 September 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7cyk is ON HOLD	+	The entry 7cyk is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7cyk" [edit=sysop:move=sysop]

OCA — Wed, 09 Sep 2020 07:37:35 GMT

Protected "7cyk" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:37, 9 September 2020

OCA: New page: '''Unreleased structure''' The entry 7cyk is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 09 Sep 2020 07:37:33 GMT

New page: '''Unreleased structure''' The entry 7cyk is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7cyk is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7cyk - Revision history

OCA at 16:20, 29 November 2023

OCA at 05:55, 20 January 2021

OCA at 06:52, 16 September 2020

OCA: Protected "7cyk" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7cyk is ON HOLD Authors: Description: Category: Unreleased Structures