7ddr - Revision history

OCA at 16:31, 29 November 2023

OCA — Wed, 29 Nov 2023 16:31:11 GMT

←Older revision		Revision as of 16:31, 29 November 2023
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	==Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)==		==Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)==
-	<StructureSection load='7ddr' size='340' side='right'caption='[[7ddr]]' scene=''>	+	<StructureSection load='7ddr' size='340' side='right'caption='[[7ddr]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DDR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ddr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DDR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ddr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ddr OCA], [https://pdbe.org/7ddr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ddr RCSB], [https://www.ebi.ac.uk/pdbsum/7ddr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ddr ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ddr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ddr OCA], [https://pdbe.org/7ddr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ddr RCSB], [https://www.ebi.ac.uk/pdbsum/7ddr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ddr ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Myoglobin (Mb) is highly concentrated in the myocytes of diving mammals such as whales and seals, in comparison with land animals, and its molecular evolution has played a crucial role in their deep-sea adaptation. We previously resurrected ancestral whale Mbs and demonstrated the evolutional strategies for higher solubility under macromolecular crowding conditions. Pinnipeds, such as seals and sea lions, are also expert diving mammals with Mb-rich muscles. In the present study, we resurrected ancestral pinniped Mbs and investigated their biochemical and structural properties. Comparisons between pinniped and whale Mbs revealed the common and distinctive strategies for the deep-sea adaptation. The overall evolution processes, gaining precipitant tolerance and improving thermodynamic stability, were commonly observed. However, the strategies for improving the folding stability differed, and the pinniped Mbs exploited the shielding of hydrophobic surfaces more effectively than the whale Mbs.
		+
		+	Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals.,Isogai Y, Imamura H, Nakae S, Sumi T, Takahashi KI, Shirai T iScience. 2021 Jul 30;24(8):102920. doi: 10.1016/j.isci.2021.102920. eCollection , 2021 Aug 20. PMID:34430810<ref>PMID:34430810</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ddr" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Myoglobin 3D structures\|Myoglobin 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Synthetic construct]]
	[[Category: Imamura H]]		[[Category: Imamura H]]
	[[Category: Isogai Y]]		[[Category: Isogai Y]]

OCA at 08:56, 8 September 2021

OCA — Wed, 08 Sep 2021 08:56:16 GMT

←Older revision		Revision as of 08:56, 8 September 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7ddr ~~is ON HOLD until Paper Publication~~	+	==Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)==
-		+	<StructureSection load='7ddr' size='340' side='right'caption='[[7ddr]]' scene=''>
-	~~Authors~~: ~~Isogai, Y~~., ~~Imamura, H~~., ~~Nakae, S~~., ~~Sumi, T~~., ~~Takahashi, K~~., ~~Shirai, T~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DDR FirstGlance]. <br>
-	~~Description: Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ddr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ddr OCA], [https://pdbe.org/7ddr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ddr RCSB], [https://www.ebi.ac.uk/pdbsum/7ddr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ddr ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Sumi, T~~]]	+	__TOC__
-	[[Category: Isogai, Y]]	+	</StructureSection>
-	[[Category: ~~Takahashi, K~~]]	+	[[Category: Large Structures]]
-	[[Category: Shirai, T]]	+	[[Category: Imamura H]]
-	[[Category: ~~Nakae, S~~]]	+	[[Category: Isogai Y]]
-	[[Category: ~~Imamura, H~~]]	+	[[Category: Nakae S]]
		+	[[Category: Shirai T]]
		+	[[Category: Sumi T]]
		+	[[Category: Takahashi K]]

OCA at 13:20, 2 June 2021

OCA — Wed, 02 Jun 2021 13:20:44 GMT

←Older revision		Revision as of 13:20, 2 June 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ddr is ON HOLD	+	The entry 7ddr is ON HOLD until Paper Publication

	Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.		Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.
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	Description: Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)		Description: Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Shirai, T]]
-	[[Category: Nakae, S]]
	[[Category: Sumi, T]]		[[Category: Sumi, T]]
-	[[Category: Takahashi, K]]
	[[Category: Isogai, Y]]		[[Category: Isogai, Y]]
		+	[[Category: Takahashi, K]]
		+	[[Category: Shirai, T]]
		+	[[Category: Nakae, S]]
	[[Category: Imamura, H]]		[[Category: Imamura, H]]

OCA: Protected "7ddr" [edit=sysop:move=sysop]

OCA — Wed, 04 Nov 2020 05:32:44 GMT

Protected "7ddr" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:32, 4 November 2020

OCA: New page: '''Unreleased structure''' The entry 7ddr is ON HOLD Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T. Description: Ancestral myoglobin aMbSp of Puijila ...

OCA — Wed, 04 Nov 2020 05:32:43 GMT

New page: '''Unreleased structure''' The entry 7ddr is ON HOLD Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T. Description: Ancestral myoglobin aMbSp of Puijila ...

New page

'''Unreleased structure'''

The entry 7ddr is ON HOLD

Authors: Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Shirai, T.

Description: Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)
[[Category: Unreleased Structures]]
[[Category: Shirai, T]]
[[Category: Nakae, S]]
[[Category: Sumi, T]]
[[Category: Takahashi, K]]
[[Category: Isogai, Y]]
[[Category: Imamura, H]]