7dou - Revision history

OCA at 08:35, 23 February 2022

OCA — Wed, 23 Feb 2022 08:35:07 GMT

←Older revision		Revision as of 08:35, 23 February 2022
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	==Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40==		==Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40==
-	<StructureSection load='7dou' size='340' side='right'caption='[[7dou]]' scene=''>	+	<StructureSection load='7dou' size='340' side='right'caption='[[7dou]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DOU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DOU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7dou]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_phage_khp40 Helicobacter phage khp40]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DOU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DOU FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dou OCA], [https://pdbe.org/7dou PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dou RCSB], [https://www.ebi.ac.uk/pdbsum/7dou PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dou ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dou OCA], [https://pdbe.org/7dou PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dou RCSB], [https://www.ebi.ac.uk/pdbsum/7dou PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dou ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The acid-stable capsid structures of Helicobacter pylori phages KHP30 and KHP40 are solved at 2.7 and 3.0 A resolutions by cryoelectron microscopy, respectively. The capsids have icosahedral T = 9 symmetry and consist of each 540 copies of 2 structural proteins, a major capsid protein, and a cement protein. The major capsid proteins form 12 pentagonal capsomeres occupying icosahedral vertexes and 80 hexagonal capsomeres located at icosahedral faces and edges. The major capsid protein has a unique protruding loop extending to the neighboring subunit that stabilizes hexagonal capsomeres. Furthermore, the capsid is decorated with trimeric cement proteins with a jelly roll motif. The cement protein trimer sits on the quasi-three-fold axis formed by three major capsid protein capsomeres, thereby enhancing the particle stability by connecting these capsomeres. Sequence and structure comparisons between the related Helicobacter pylori phages suggest a possible mechanism of phage adaptation to the human gastric environment.
		+
		+	Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy.,Kamiya R, Uchiyama J, Matsuzaki S, Murata K, Iwasaki K, Miyazaki N Structure. 2021 Sep 27. pii: S0969-2126(21)00329-4. doi:, 10.1016/j.str.2021.09.001. PMID:34597601<ref>PMID:34597601</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7dou" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Helicobacter phage khp40]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Iwasaki K]]	+	[[Category: Iwasaki, K]]
-	[[Category: Kamiya R]]	+	[[Category: Kamiya, R]]
-	[[Category: Matsuzaki S]]	+	[[Category: Matsuzaki, S]]
-	[[Category: Miyazaki N]]	+	[[Category: Miyazaki, N]]
-	[[Category: Murata K]]	+	[[Category: Murata, K]]
-	[[Category: Uchiyama J]]	+	[[Category: Uchiyama, J]]
		+	[[Category: Capsid]]
		+	[[Category: Cryoem]]
		+	[[Category: Phage]]
		+	[[Category: Phage head]]
		+	[[Category: Virus]]

OCA at 14:09, 27 October 2021

OCA — Wed, 27 Oct 2021 14:09:58 GMT

←Older revision		Revision as of 14:09, 27 October 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7dou is ~~ON HOLD until Paper Publication~~	+	==Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40==
-		+	<StructureSection load='7dou' size='340' side='right'caption='[[7dou]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DOU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DOU FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dou OCA], [https://pdbe.org/7dou PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dou RCSB], [https://www.ebi.ac.uk/pdbsum/7dou PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dou ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Iwasaki K]]
		+	[[Category: Kamiya R]]
		+	[[Category: Matsuzaki S]]
		+	[[Category: Miyazaki N]]
		+	[[Category: Murata K]]
		+	[[Category: Uchiyama J]]

OCA at 10:10, 13 October 2021

OCA — Wed, 13 Oct 2021 10:10:47 GMT

←Older revision		Revision as of 10:10, 13 October 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7dou is ON HOLD	+	The entry 7dou is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7dou" [edit=sysop:move=sysop]

OCA — Thu, 24 Dec 2020 07:56:33 GMT

Protected "7dou" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:56, 24 December 2020

OCA: New page: '''Unreleased structure''' The entry 7dou is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 24 Dec 2020 07:56:32 GMT

New page: '''Unreleased structure''' The entry 7dou is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7dou is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]