OCA at 16:47, 29 November 2023

OCA — Wed, 29 Nov 2023 16:47:26 GMT

←Older revision		Revision as of 16:47, 29 November 2023
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-	====	+	==Crystal structure of diguanylate cyclase SiaD in complex with its activator SiaC from Pseudomonas aeruginosa==
-	<StructureSection load='7e6g' size='340' side='right'caption='[[7e6g]]' scene=''>	+	<StructureSection load='7e6g' size='340' side='right'caption='[[7e6g]], [[Resolution\|resolution]] 2.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7e6g]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7E6G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7E6G FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e6g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e6g OCA], [https://pdbe.org/7e6g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e6g RCSB], [https://www.ebi.ac.uk/pdbsum/7e6g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e6g ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.65Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=G2P:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>G2P</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e6g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e6g OCA], [https://pdbe.org/7e6g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e6g RCSB], [https://www.ebi.ac.uk/pdbsum/7e6g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e6g ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A072ZHB4_PSEAI A0A072ZHB4_PSEAI]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cyclic-di-guanosine monophosphate (c-di-GMP) is an important effector associated with acute-chronic infection transition in Pseudomonas aeruginosa. Previously, we reported a signaling network SiaABCD, which regulates biofilm formation by modulating c-di-GMP level. However, the mechanism for SiaD activation by SiaC remains elusive. Here we determine the crystal structure of SiaC-SiaD-GpCpp complex and revealed a unique mirror symmetric conformation: two SiaD form a dimer with long stalk domains, while four SiaC bind to the conserved motifs on the stalks of SiaD and stabilize the conformation for further enzymatic catalysis. Furthermore, SiaD alone exhibits an inactive pentamer conformation in solution, demonstrating that SiaC activates SiaD through a dynamic mechanism of promoting the formation of active SiaD dimers. Mutagenesis assay confirmed that the stalks of SiaD are necessary for its activation. Together, we reveal a novel mechanism for DGC activation, which clarifies the regulatory networks of c-di-GMP signaling.
		+
		+	Structural basis for diguanylate cyclase activation by its binding partner in Pseudomonas aeruginosa.,Chen G, Zhou J, Zuo Y, Huo W, Peng J, Li M, Zhang Y, Wang T, Zhang L, Zhang L, Liang H Elife. 2021 Sep 9;10:e67289. doi: 10.7554/eLife.67289. PMID:34498587<ref>PMID:34498587</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7e6g" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Diguanylate cyclase\|Diguanylate cyclase]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Pseudomonas aeruginosa]]
		+	[[Category: Zhang L]]
		+	[[Category: Zhou JS]]

OCA at 06:49, 22 September 2021

OCA — Wed, 22 Sep 2021 06:49:23 GMT

←Older revision		Revision as of 06:49, 22 September 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7e6g ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7e6g' size='340' side='right'caption='[[7e6g]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7e6g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7e6g OCA], [https://pdbe.org/7e6g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7e6g RCSB], [https://www.ebi.ac.uk/pdbsum/7e6g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7e6g ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 04:28, 7 April 2021

OCA — Wed, 07 Apr 2021 04:28:16 GMT

←Older revision		Revision as of 04:28, 7 April 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7e6g is ON HOLD	+	The entry 7e6g is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7e6g" [edit=sysop:move=sysop]

OCA — Wed, 03 Mar 2021 13:17:50 GMT

Protected "7e6g" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:17, 3 March 2021

OCA: New page: '''Unreleased structure''' The entry 7e6g is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 03 Mar 2021 13:17:48 GMT

New page: '''Unreleased structure''' The entry 7e6g is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7e6g is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7e6g - Revision history

OCA at 16:47, 29 November 2023

OCA at 06:49, 22 September 2021

OCA at 04:28, 7 April 2021

OCA: Protected "7e6g" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7e6g is ON HOLD Authors: Description: Category: Unreleased Structures