OCA at 16:55, 29 November 2023

OCA — Wed, 29 Nov 2023 16:55:32 GMT

←Older revision		Revision as of 16:55, 29 November 2023
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-	====	+	==Structure of viral peptides IPB19/N52==
-	<StructureSection load='7ek6' size='340' side='right'caption='[[7ek6]]' scene=''>	+	<StructureSection load='7ek6' size='340' side='right'caption='[[7ek6]], [[Resolution\|resolution]] 1.24Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ek6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EK6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ek6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ek6 OCA], [https://pdbe.org/7ek6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ek6 RCSB], [https://www.ebi.ac.uk/pdbsum/7ek6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ek6 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.243Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ek6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ek6 OCA], [https://pdbe.org/7ek6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ek6 RCSB], [https://www.ebi.ac.uk/pdbsum/7ek6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ek6 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SPIKE_SARS2 SPIKE_SARS2] attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Binding to human ACE2 receptor and internalization of the virus into the endosomes of the host cell induces conformational changes in the Spike glycoprotein (PubMed:32142651, PubMed:32075877, PubMed:32155444). Uses also human TMPRSS2 for priming in human lung cells which is an essential step for viral entry (PubMed:32142651). Proteolysis by cathepsin CTSL may unmask the fusion peptide of S2 and activate membranes fusion within endosomes.[HAMAP-Rule:MF_04099]<ref>PMID:32075877</ref> <ref>PMID:32142651</ref> <ref>PMID:32155444</ref> mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The ongoing pandemic of COVID-19, caused by SARS-CoV-2, has severely impacted the global public health and socio-economic stability, calling for effective vaccines and therapeutics. In this study, we continued our efforts to develop more efficient SARS-CoV-2 fusion inhibitors and achieved significant findings. First, we found that the membrane-proximal external region (MPER) sequence of SARS-CoV-2 spike fusion protein plays a critical role in viral infectivity and can serve as an ideal template for design of fusion-inhibitory peptides. Second, a panel of novel lipopeptides was generated with greatly improved activity in inhibiting SARS-CoV-2 fusion and infection. Third, we showed that the new inhibitors maintained the potent inhibitory activity against emerging SARS-CoV-2 variants, including those with the major mutations of the B.1.1.7 and B.1.351 strains circulating in the United Kingdom and South Africa, respectively. Fourth, the new inhibitors also cross-inhibited other human CoVs, including SARS-CoV, MERS-CoV, HCoV-229E, and HCoV-NL63. Fifth, the structural properties of the new inhibitors were characterized by circular dichroism (CD) spectroscopy and crystallographic approach, which revealed the mechanisms underlying the high binding and inhibition. Combined, our studies provide important information for understanding the mechanism of SARS-CoV-2 fusion and a framework for the development of peptide therapeutics for the treatment of SARS-CoV-2 and other CoVs.
		+
		+	Structure-based design and characterization of novel fusion-inhibitory lipopeptides against SARS-CoV-2 and emerging variants.,Yu D, Zhu Y, Jiao T, Wu T, Xiao X, Qin B, Chong H, Lei X, Ren L, Cui S, Wang J, He Y Emerg Microbes Infect. 2021 Dec;10(1):1227-1240. doi: , 10.1080/22221751.2021.1937329. PMID:34057039<ref>PMID:34057039</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ek6" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Severe acute respiratory syndrome coronavirus 2]]
		+	[[Category: Cui S]]
		+	[[Category: He Y]]
		+	[[Category: Qin B]]
		+	[[Category: Yu D]]

OCA at 12:13, 9 June 2021

OCA — Wed, 09 Jun 2021 12:13:37 GMT

←Older revision		Revision as of 12:13, 9 June 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7ek6 ~~is ON HOLD~~	+	====
-		+	<StructureSection load='7ek6' size='340' side='right'caption='[[7ek6]]' scene=''>
-	~~Authors~~: ~~Yu, D~~.~~, Qin, B~~.~~, Cui, S~~.~~, He, Y~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~Structure of viral peptides IPB19~~/~~N52~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ek6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ek6 OCA], [https://pdbe.org/7ek6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ek6 RCSB], [https://www.ebi.ac.uk/pdbsum/7ek6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ek6 ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[~~[Category~~: Yu, D]]	+	__TOC__
-	[~~[Category~~: ~~He, Y~~]]	+	</StructureSection>
-	[[Category: ~~Cui, S~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Qin, B~~]]	+	[[Category: Z-disk]]

OCA: Protected "7ek6" [edit=sysop:move=sysop]

OCA — Wed, 14 Apr 2021 05:35:23 GMT

Protected "7ek6" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:35, 14 April 2021

OCA: New page: '''Unreleased structure''' The entry 7ek6 is ON HOLD Authors: Yu, D., Qin, B., Cui, S., He, Y. Description: Structure of viral peptides IPB19/N52 Category: Unreleased Structures [[...

OCA — Wed, 14 Apr 2021 05:35:23 GMT

New page: '''Unreleased structure''' The entry 7ek6 is ON HOLD Authors: Yu, D., Qin, B., Cui, S., He, Y. Description: Structure of viral peptides IPB19/N52 Category: Unreleased Structures [[...

New page

'''Unreleased structure'''

The entry 7ek6 is ON HOLD

Authors: Yu, D., Qin, B., Cui, S., He, Y.

Description: Structure of viral peptides IPB19/N52
[[Category: Unreleased Structures]]
[[Category: Yu, D]]
[[Category: He, Y]]
[[Category: Cui, S]]
[[Category: Qin, B]]

7ek6 - Revision history

OCA at 16:55, 29 November 2023

OCA at 12:13, 9 June 2021

OCA: Protected "7ek6" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7ek6 is ON HOLD Authors: Yu, D., Qin, B., Cui, S., He, Y. Description: Structure of viral peptides IPB19/N52 Category: Unreleased Structures [[...