7eq9 - Revision history

OCA at 16:59, 29 November 2023

OCA — Wed, 29 Nov 2023 16:59:45 GMT

←Older revision		Revision as of 16:59, 29 November 2023
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	<StructureSection load='7eq9' size='340' side='right'caption='[[7eq9]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='7eq9' size='340' side='right'caption='[[7eq9]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7eq9]] is a 60 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EQ9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7eq9]] is a 60 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EQ9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eq9 OCA], [https://pdbe.org/7eq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eq9 RCSB], [https://www.ebi.ac.uk/pdbsum/7eq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eq9 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eq9 OCA], [https://pdbe.org/7eq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eq9 RCSB], [https://www.ebi.ac.uk/pdbsum/7eq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eq9 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arai, R]]	+	[[Category: Synthetic construct]]
-	[[Category: Kawakami, N]]	+	[[Category: Arai R]]
-	[[Category: Kikkawa, M]]	+	[[Category: Kawakami N]]
-	[[Category: Miyamoto, K]]	+	[[Category: Kikkawa M]]
-	[[Category: Obata, J]]	+	[[Category: Miyamoto K]]
-	[[Category: Tsutsumi, A]]	+	[[Category: Obata J]]
-	~~[[Category: Artificial designed protein complex]]~~	+	[[Category: Tsutsumi A]]
-	~~[[Category: De novo protein]]~~	+
-	~~[[Category: Virus like particle~~]]	+

OCA at 07:14, 16 March 2022

OCA — Wed, 16 Mar 2022 07:14:49 GMT

←Older revision		Revision as of 07:14, 16 March 2022
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	==Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)==		==Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)==
-	<StructureSection load='7eq9' size='340' side='right'caption='[[7eq9]]' scene=''>	+	<StructureSection load='7eq9' size='340' side='right'caption='[[7eq9]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EQ9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7eq9]] is a 60 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EQ9 FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eq9 OCA], [https://pdbe.org/7eq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eq9 RCSB], [https://www.ebi.ac.uk/pdbsum/7eq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eq9 ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eq9 OCA], [https://pdbe.org/7eq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eq9 RCSB], [https://www.ebi.ac.uk/pdbsum/7eq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eq9 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Supramolecular protein nanoparticles and nanocages have potential in a broad range of applications. Recently, we developed a uniform supramolecular protein nanoparticle, TIP60, symmmetrically self-assembled from fusion proteins of a pentameric Sm-like protein and a dimeric MyoX-coil domain. Herein, we report the icosahedral 60-meric structure of TIP60 solved using single-particle cryo-electron microscopy. Interestingly, the structure revealed 20 regular-triangle-like pores on the surface. TIP60 and its mutants have many modifiable sites on their exterior and interior surfaces. The TIP60 architecture will be useful in the development of biomedical and biochemical nanoparticles/nanocages for future applications.
		+
		+	Icosahedral 60-meric porous structure of designed supramolecular protein nanoparticle TIP60.,Obata J, Kawakami N, Tsutsumi A, Nasu E, Miyamoto K, Kikkawa M, Arai R Chem Commun (Camb). 2021 Oct 5;57(79):10226-10229. doi: 10.1039/d1cc03114g. PMID:34523636<ref>PMID:34523636</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7eq9" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arai R]]	+	[[Category: Arai, R]]
-	[[Category: Kawakami N]]	+	[[Category: Kawakami, N]]
-	[[Category: Kikkawa M]]	+	[[Category: Kikkawa, M]]
-	[[Category: Miyamoto K]]	+	[[Category: Miyamoto, K]]
-	[[Category: Obata J]]	+	[[Category: Obata, J]]
-	[[Category: Tsutsumi A]]	+	[[Category: Tsutsumi, A]]
		+	[[Category: Artificial designed protein complex]]
		+	[[Category: De novo protein]]
		+	[[Category: Virus like particle]]

OCA at 09:25, 15 September 2021

OCA — Wed, 15 Sep 2021 09:25:53 GMT

←Older revision		Revision as of 09:25, 15 September 2021
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-	'''Unreleased structure'''

-	~~The entry 7eq9 is ON HOLD until Paper Publication~~	+	==Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)==
-		+	<StructureSection load='7eq9' size='340' side='right'caption='[[7eq9]]' scene=''>
-	~~Authors: Obata, J., Kawakami, N., Tsutsumi, A., Miyamoto, K., Kikkawa, M., Arai, R.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7EQ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7EQ9 FirstGlance]. <br>
-	~~Description:~~ Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7eq9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7eq9 OCA], [https://pdbe.org/7eq9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7eq9 RCSB], [https://www.ebi.ac.uk/pdbsum/7eq9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7eq9 ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Kikkawa~~, M]]	+	__TOC__
-	[[Category: ~~Miyamoto, K~~]]	+	</StructureSection>
-	[[Category: Kawakami, N]]	+	[[Category: Large Structures]]
-	[[Category: ~~Tsutsumi, A~~]]	+	[[Category: Arai R]]
-	[[Category: Obata, J]]	+	[[Category: Kawakami N]]
-	[[Category: ~~Arai, R~~]]	+	[[Category: Kikkawa M]]
		+	[[Category: Miyamoto K]]
		+	[[Category: Obata J]]
		+	[[Category: Tsutsumi A]]

OCA at 04:54, 18 August 2021

OCA — Wed, 18 Aug 2021 04:54:05 GMT

←Older revision		Revision as of 04:54, 18 August 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7eq9 is ON HOLD	+	The entry 7eq9 is ON HOLD until Paper Publication

	Authors: Obata, J., Kawakami, N., Tsutsumi, A., Miyamoto, K., Kikkawa, M., Arai, R.		Authors: Obata, J., Kawakami, N., Tsutsumi, A., Miyamoto, K., Kikkawa, M., Arai, R.
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	Description: Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)		Description: Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Kikkawa, M]]
	[[Category: Miyamoto, K]]		[[Category: Miyamoto, K]]
	[[Category: Kawakami, N]]		[[Category: Kawakami, N]]
-	[[Category: Arai, R]]
-	[[Category: Kikkawa, M]]
	[[Category: Tsutsumi, A]]		[[Category: Tsutsumi, A]]
	[[Category: Obata, J]]		[[Category: Obata, J]]
		+	[[Category: Arai, R]]

OCA: Protected "7eq9" [edit=sysop:move=sysop]

OCA — Wed, 12 May 2021 08:03:36 GMT

Protected "7eq9" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:03, 12 May 2021

OCA: New page: '''Unreleased structure''' The entry 7eq9 is ON HOLD Authors: Obata, J., Kawakami, N., Tsutsumi, A., Miyamoto, K., Kikkawa, M., Arai, R. Description: Cryo-EM structure of designed prot...

OCA — Wed, 12 May 2021 08:03:35 GMT

New page: '''Unreleased structure''' The entry 7eq9 is ON HOLD Authors: Obata, J., Kawakami, N., Tsutsumi, A., Miyamoto, K., Kikkawa, M., Arai, R. Description: Cryo-EM structure of designed prot...

New page

'''Unreleased structure'''

The entry 7eq9 is ON HOLD

Authors: Obata, J., Kawakami, N., Tsutsumi, A., Miyamoto, K., Kikkawa, M., Arai, R.

Description: Cryo-EM structure of designed protein nanoparticle TIP60 (Truncated Icosahedral Protein composed of 60-mer fusion proteins)
[[Category: Unreleased Structures]]
[[Category: Miyamoto, K]]
[[Category: Kawakami, N]]
[[Category: Arai, R]]
[[Category: Kikkawa, M]]
[[Category: Tsutsumi, A]]
[[Category: Obata, J]]