7erx - Revision history

OCA at 17:01, 29 November 2023

OCA — Wed, 29 Nov 2023 17:01:10 GMT

←Older revision		Revision as of 17:01, 29 November 2023
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	<StructureSection load='7erx' size='340' side='right'caption='[[7erx]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='7erx' size='340' side='right'caption='[[7erx]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7erx]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7erx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=JC6:Steviolbioside'>JC6</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.92Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=JC6:Steviolbioside'>JC6</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erx OCA], [https://pdbe.org/7erx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erx RCSB], [https://www.ebi.ac.uk/pdbsum/7erx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erx OCA], [https://pdbe.org/7erx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erx RCSB], [https://www.ebi.ac.uk/pdbsum/7erx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q0DPB7_ORYSJ Q0DPB7_ORYSJ]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 7erx" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 7erx" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glycosyltransferase 3D structures\|Glycosyltransferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Zhu, X~~]]	+	[[Category: Oryza sativa Japonica Group]]
-	[[Category: ~~Glycosyltransferase in steviol glucosylation]]~~	+	[[Category: Zhu X]]
-	~~[[Category: Transferase~~]]	+

OCA at 16:56, 15 December 2021

OCA — Wed, 15 Dec 2021 16:56:31 GMT

←Older revision		Revision as of 16:56, 15 December 2021
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	==Glycosyltransferase in complex with UDP and STB==		==Glycosyltransferase in complex with UDP and STB==
-	<StructureSection load='7erx' size='340' side='right'caption='[[7erx]]' scene=''>	+	<StructureSection load='7erx' size='340' side='right'caption='[[7erx]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7erx]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erx OCA], [https://pdbe.org/7erx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erx RCSB], [https://www.ebi.ac.uk/pdbsum/7erx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erx ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=JC6:Steviolbioside'>JC6</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erx OCA], [https://pdbe.org/7erx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erx RCSB], [https://www.ebi.ac.uk/pdbsum/7erx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erx ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Steviol glycosides are the intensely sweet components of extracts from Stevia rebaudiana. These molecules comprise an invariant steviol aglycone decorated with variable glycans and could widely serve as a low-calorie sweetener. However, the most desirable steviol glycosides Reb D and Reb M, devoid of unpleasant aftertaste, are naturally produced only in trace amounts due to low levels of specific beta (1-2) glucosylation in Stevia. Here, we report the biochemical and structural characterization of OsUGT91C1, a glycosyltransferase from Oryza sativa, which is efficient at catalyzing beta (1-2) glucosylation. The enzyme's ability to bind steviol glycoside substrate in three modes underlies its flexibility to catalyze beta (1-2) glucosylation in two distinct orientations as well as beta (1-6) glucosylation. Guided by the structural insights, we engineer this enzyme to enhance the desirable beta (1-2) glucosylation, eliminate beta (1-6) glucosylation, and obtain a promising catalyst for the industrial production of naturally rare but palatable steviol glycosides.
		+
		+	Catalytic flexibility of rice glycosyltransferase OsUGT91C1 for the production of palatable steviol glycosides.,Zhang J, Tang M, Chen Y, Ke D, Zhou J, Xu X, Yang W, He J, Dong H, Wei Y, Naismith JH, Lin Y, Zhu X, Cheng W Nat Commun. 2021 Dec 2;12(1):7030. doi: 10.1038/s41467-021-27144-4. PMID:34857750<ref>PMID:34857750</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7erx" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Zhu X]]	+	[[Category: Zhu, X]]
		+	[[Category: Glycosyltransferase in steviol glucosylation]]
		+	[[Category: Transferase]]

OCA at 09:55, 8 December 2021

OCA — Wed, 08 Dec 2021 09:55:11 GMT

←Older revision		Revision as of 09:55, 8 December 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7erx ~~is ON HOLD until May 08 2023~~	+	==Glycosyltransferase in complex with UDP and STB==
-		+	<StructureSection load='7erx' size='340' side='right'caption='[[7erx]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ERX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ERX FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7erx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7erx OCA], [https://pdbe.org/7erx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7erx RCSB], [https://www.ebi.ac.uk/pdbsum/7erx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7erx ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Zhu X]]

OCA at 07:48, 26 May 2021

OCA — Wed, 26 May 2021 07:48:31 GMT

←Older revision		Revision as of 07:48, 26 May 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7erx is ON HOLD	+	The entry 7erx is ON HOLD until May 08 2023

	Authors:		Authors:

OCA: Protected "7erx" [edit=sysop:move=sysop]

OCA — Wed, 19 May 2021 08:43:04 GMT

Protected "7erx" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:43, 19 May 2021

OCA: New page: '''Unreleased structure''' The entry 7erx is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 19 May 2021 08:43:02 GMT

New page: '''Unreleased structure''' The entry 7erx is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7erx is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]