7ju3 - Revision history

OCA at 15:11, 18 October 2023

OCA — Wed, 18 Oct 2023 15:11:29 GMT

←Older revision		Revision as of 15:11, 18 October 2023
Line 1:		Line 1:

-	====	+	==MtrR bound to the mtrCDE operator from Neisseria gonorrhoeae==
-	<StructureSection load='7ju3' size='340' side='right'caption='[[7ju3]]' scene=''>	+	<StructureSection load='7ju3' size='340' side='right'caption='[[7ju3]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ju3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae Neisseria gonorrhoeae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JU3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ju3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ju3 OCA], [https://pdbe.org/7ju3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ju3 RCSB], [https://www.ebi.ac.uk/pdbsum/7ju3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ju3 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ju3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ju3 OCA], [https://pdbe.org/7ju3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ju3 RCSB], [https://www.ebi.ac.uk/pdbsum/7ju3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ju3 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/MTRR_NEIGO MTRR_NEIGO] Controls the permeability of the cell envelope to hydrophobic compounds such as antibiotics and detergents (PubMed:8196548). Represses transcription of the mtrCDE-encoded efflux pump by binding within the mtrCDE promoter (PubMed:9209024, PubMed:23221802). Also negatively regulates the expression of farR, by binding to its promoter region, leading indirectly to the positive regulation of expression of the farAB-encoded efflux pump (PubMed:14645274).<ref>PMID:14645274</ref> <ref>PMID:23221802</ref> <ref>PMID:8196548</ref> <ref>PMID:9209024</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Mutations within the mtrR gene are commonly found amongst multidrug resistant clinical isolates of Neisseria gonorrhoeae, which has been labelled a superbug by the Centers for Disease Control and Prevention. These mutations appear to contribute to antibiotic resistance by interfering with the ability of MtrR to bind to and repress expression of its target genes, which include the mtrCDE multidrug efflux transporter genes and the rpoH oxidative stress response sigma factor gene. However, the DNA-recognition mechanism of MtrR and the consensus sequence within these operators to which MtrR binds has remained unknown. In this work, we report the crystal structures of MtrR bound to the mtrCDE and rpoH operators, which reveal a conserved, but degenerate, DNA consensus binding site 5'-MCRTRCRN4YGYAYGK-3'. We complement our structural data with a comprehensive mutational analysis of key MtrR-DNA contacts to reveal their importance for MtrR-DNA binding both in vitro and in vivo. Furthermore, we model and generate common clinical mutations of MtrR to provide plausible biochemical explanations for the contribution of these mutations to multidrug resistance in N. gonorrhoeae. Collectively, our findings unveil key biological mechanisms underlying the global stress responses of N. gonorrhoeae.
		+
		+	Structures of Neisseria gonorrhoeae MtrR-operator complexes reveal molecular mechanisms of DNA recognition and antibiotic resistance-conferring clinical mutations.,Beggs GA, Ayala JC, Kavanaugh LG, Read TD, Hooks GM, Schumacher MA, Shafer WM, Brennan RG Nucleic Acids Res. 2021 Apr 19;49(7):4155-4170. doi: 10.1093/nar/gkab213. PMID:33784401<ref>PMID:33784401</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ju3" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tetracycline repressor protein 3D structures\|Tetracycline repressor protein 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Neisseria gonorrhoeae]]
		+	[[Category: Beggs GA]]
		+	[[Category: Brennan RG]]
		+	[[Category: Shafer WM]]

OCA at 06:41, 24 March 2021

OCA — Wed, 24 Mar 2021 06:41:03 GMT

←Older revision		Revision as of 06:41, 24 March 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7ju3 ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7ju3' size='340' side='right'caption='[[7ju3]]' scene=''>
-	~~Authors~~: ~~Beggs, G~~.A.~~, Shafer, W~~.M.~~, Brennan, R~~.G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~MtrR bound to the mtrCDE operator from Neisseria gonorrhoeae~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ju3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ju3 OCA], [https://pdbe.org/7ju3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ju3 RCSB], [https://www.ebi.ac.uk/pdbsum/7ju3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ju3 ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Beggs~~, G.A]]	+	__TOC__
-	[[Category: ~~Shafer, W.M~~]]	+	</StructureSection>
-	[[Category: ~~Brennan, R.G~~]]	+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 05:21, 2 September 2020

OCA — Wed, 02 Sep 2020 05:21:17 GMT

←Older revision		Revision as of 05:21, 2 September 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ju3 is ON HOLD	+	The entry 7ju3 is ON HOLD until Paper Publication

	Authors: Beggs, G.A., Shafer, W.M., Brennan, R.G.		Authors: Beggs, G.A., Shafer, W.M., Brennan, R.G.

OCA: Protected "7ju3" [edit=sysop:move=sysop]

OCA — Wed, 26 Aug 2020 09:41:32 GMT

Protected "7ju3" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:41, 26 August 2020

OCA: New page: '''Unreleased structure''' The entry 7ju3 is ON HOLD Authors: Beggs, G.A., Shafer, W.M., Brennan, R.G. Description: MtrR bound to the mtrCDE operator from Neisseria gonorrhoeae [[Categ...

OCA — Wed, 26 Aug 2020 09:41:30 GMT

New page: '''Unreleased structure''' The entry 7ju3 is ON HOLD Authors: Beggs, G.A., Shafer, W.M., Brennan, R.G. Description: MtrR bound to the mtrCDE operator from Neisseria gonorrhoeae [[Categ...

New page

'''Unreleased structure'''

The entry 7ju3 is ON HOLD

Authors: Beggs, G.A., Shafer, W.M., Brennan, R.G.

Description: MtrR bound to the mtrCDE operator from Neisseria gonorrhoeae
[[Category: Unreleased Structures]]
[[Category: Beggs, G.A]]
[[Category: Shafer, W.M]]
[[Category: Brennan, R.G]]