7jvi - Revision history

OCA at 10:38, 22 May 2024

OCA — Wed, 22 May 2024 10:38:17 GMT

←Older revision		Revision as of 10:38, 22 May 2024
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	<StructureSection load='7jvi' size='340' side='right'caption='[[7jvi]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='7jvi' size='340' side='right'caption='[[7jvi]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7jvi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Environmental_sequence Environmental sequence~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JVI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7jvi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Metagenome Metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JVI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jvi OCA], [https://pdbe.org/7jvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jvi RCSB], [https://www.ebi.ac.uk/pdbsum/7jvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jvi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jvi OCA], [https://pdbe.org/7jvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jvi RCSB], [https://www.ebi.ac.uk/pdbsum/7jvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jvi ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Environmental sequence]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Domingues, M N~~]]	+	[[Category: Metagenome]]
-	[[Category: ~~Genoroso, W C~~]]	+	[[Category: Domingues MN]]
-	[[Category: ~~Martins, M P~~]]	+	[[Category: Genoroso WC]]
-	[[Category: ~~Morais, M A.B~~]]	+	[[Category: Martins MP]]
-	[[Category: ~~Murakami, M T~~]]	+	[[Category: Morais MAB]]
-	[[Category: ~~Persinoti, G F~~]]	+	[[Category: Murakami MT]]
-	[[Category: ~~Cazyme]]~~	+	[[Category: Persinoti GF]]
-	~~[[Category: Glycogenomic]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 11:12, 30 March 2022

OCA — Wed, 30 Mar 2022 11:12:45 GMT

←Older revision		Revision as of 11:12, 30 March 2022
Line 1:		Line 1:

	==Crystal structure of a beta-helix domain retrieved from capybara gut metagenome==		==Crystal structure of a beta-helix domain retrieved from capybara gut metagenome==
-	<StructureSection load='7jvi' size='340' side='right'caption='[[7jvi]]' scene=''>	+	<StructureSection load='7jvi' size='340' side='right'caption='[[7jvi]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JVI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7jvi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Environmental_sequence Environmental sequence]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JVI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jvi OCA], [https://pdbe.org/7jvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jvi RCSB], [https://www.ebi.ac.uk/pdbsum/7jvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jvi ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jvi OCA], [https://pdbe.org/7jvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jvi RCSB], [https://www.ebi.ac.uk/pdbsum/7jvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jvi ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The largest living rodent, capybara, can efficiently depolymerize and utilize lignocellulosic biomass through microbial symbiotic mechanisms yet elusive. Herein, we elucidate the microbial community composition, enzymatic systems and metabolic pathways involved in the conversion of dietary fibers into short-chain fatty acids, a main energy source for the host. In this microbiota, the unconventional enzymatic machinery from Fibrobacteres seems to drive cellulose degradation, whereas a diverse set of carbohydrate-active enzymes from Bacteroidetes, organized in polysaccharide utilization loci, are accounted to tackle complex hemicelluloses typically found in gramineous and aquatic plants. Exploring the genetic potential of this community, we discover a glycoside hydrolase family of beta-galactosidases (named as GH173), and a carbohydrate-binding module family (named as CBM89) involved in xylan binding that establishes an unprecedented three-dimensional fold among associated modules to carbohydrate-active enzymes. Together, these results demonstrate how the capybara gut microbiota orchestrates the depolymerization and utilization of plant fibers, representing an untapped reservoir of enzymatic mechanisms to overcome the lignocellulose recalcitrance, a central challenge toward a sustainable and bio-based economy.
		+
		+	Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.,Cabral L, Persinoti GF, Paixao DAA, Martins MP, Morais MAB, Chinaglia M, Domingues MN, Sforca ML, Pirolla RAS, Generoso WC, Santos CA, Maciel LF, Terrapon N, Lombard V, Henrissat B, Murakami MT Nat Commun. 2022 Feb 2;13(1):629. doi: 10.1038/s41467-022-28310-y. PMID:35110564<ref>PMID:35110564</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7jvi" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Environmental sequence]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Domingues MN]]	+	[[Category: Domingues, M N]]
-	[[Category: Genoroso WC]]	+	[[Category: Genoroso, W C]]
-	[[Category: Martins MP]]	+	[[Category: Martins, M P]]
-	[[Category: Morais ~~MAB~~]]	+	[[Category: Morais, M A.B]]
-	[[Category: Murakami MT]]	+	[[Category: Murakami, M T]]
-	[[Category: Persinoti GF]]	+	[[Category: Persinoti, G F]]
		+	[[Category: Cazyme]]
		+	[[Category: Glycogenomic]]
		+	[[Category: Unknown function]]

OCA at 08:57, 8 September 2021

OCA — Wed, 08 Sep 2021 08:57:34 GMT

←Older revision		Revision as of 08:57, 8 September 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7jvi is ~~ON HOLD~~	+	==Crystal structure of a beta-helix domain retrieved from capybara gut metagenome==
-		+	<StructureSection load='7jvi' size='340' side='right'caption='[[7jvi]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7JVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7JVI FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7jvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7jvi OCA], [https://pdbe.org/7jvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7jvi RCSB], [https://www.ebi.ac.uk/pdbsum/7jvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7jvi ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Domingues MN]]
		+	[[Category: Genoroso WC]]
		+	[[Category: Martins MP]]
		+	[[Category: Morais MAB]]
		+	[[Category: Murakami MT]]
		+	[[Category: Persinoti GF]]

OCA: Protected "7jvi" [edit=sysop:move=sysop]

OCA — Wed, 02 Sep 2020 05:22:14 GMT

Protected "7jvi" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:22, 2 September 2020

OCA: New page: '''Unreleased structure''' The entry 7jvi is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 02 Sep 2020 05:22:13 GMT

New page: '''Unreleased structure''' The entry 7jvi is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7jvi is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]