OCA at 15:23, 18 October 2023

OCA — Wed, 18 Oct 2023 15:23:27 GMT

←Older revision		Revision as of 15:23, 18 October 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 7ke5 is ~~ON HOLD until Paper~~ Publication	+	==Heavy chain ferritin with N-terminal EBNA1 epitope==
		+	<StructureSection load='7ke5' size='340' side='right'caption='[[7ke5]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7ke5]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_herpesvirus_4_strain_B95-8 Human herpesvirus 4 strain B95-8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KE5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KE5 FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ke5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ke5 OCA], [https://pdbe.org/7ke5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ke5 RCSB], [https://www.ebi.ac.uk/pdbsum/7ke5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ke5 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FRIH_HUMAN FRIH_HUMAN] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).[https://www.uniprot.org/uniprot/EBNA1_EBVB9 EBNA1_EBVB9] Plays an essential role in replication and partitioning of viral genomic DNA during latent viral infection. During this phase, the circular double-stranded viral DNA undergoes replication once per cell cycle and is efficiently partitioned to the daughter cells. EBNA1 activates the initiation of viral DNA replication through binding to specific sites in the viral latent origin of replication, oriP. Additionally, it governs the segregation of viral episomes by mediating their attachment to host cell metaphase chromosomes. Also activates the transcription of several viral latency genes. Finally, it can counteract the stabilization of host p53/TP53 by host USP7, thereby decreasing apoptosis and increasing host cell survival.<ref>PMID:15808506</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Human ferritin heavy chain, an example of a protein nanoparticle, has recently been used as a vaccine delivery platform. Human ferritin has advantages of uniform architecture, robust thermal and chemical stabilities, and good biocompatibility and biodegradation. There is however a lack of understanding about the relationship between insertion sites in ferritin (N-terminus and C-terminus) and the corresponding humoral and cell-mediated immune responses. To bridge this gap, we utilized an Epstein-Barr Nuclear Antigen 1 (EBNA1) epitope as a model to produce engineered ferritin-based vaccines E1F1 (N-terminus insertion) and F1E1 (C-terminus insertion) for the prevention of Epstein-Barr virus (EBV) infections. X-ray crystallography confirmed the relative positions of the N-terminus insertion and C-terminus insertion. For N-terminus insertion, the epitopes were located on the exterior surface of ferritin, while for C-terminus insertion, the epitopes were inside the ferritin cage. Based on the results of antigen-specific antibody titers from in-vivo tests, we found that there was no obvious difference on humoral immune responses between N-terminus and C-terminus insertion. We also evaluated splenocyte proliferation and memory lymphocyte T cell differentiation. Both results suggested C-terminus insertion produced a stronger proliferative response and cell-mediated immune response than N-terminus insertion. C-terminus insertion of EBNA1 epitope was also processed more efficiently by dendritic cells (DCs) than N-terminus insertion. This provides new insight into the relationship between the insertion site and immunogenicity of ferritin nanoparticle vaccines.

-	~~Authors~~:	+	Immunogenicity study of engineered ferritins with C- and N-terminus insertion of Epstein-Barr nuclear antigen 1 epitope.,Qu Y, Zhang B, Wang Y, Yin S, Pederick JL, Bruning JB, Sun Y, Middelberg A, Bi J Vaccine. 2021 Aug 9;39(34):4830-4841. doi: 10.1016/j.vaccine.2021.07.021. Epub , 2021 Jul 18. PMID:34284876<ref>PMID:34284876</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7ke5" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Human herpesvirus 4 strain B95-8]]
		+	[[Category: Large Structures]]
		+	[[Category: Bruning JB]]
		+	[[Category: Pederick JP]]

OCA at 08:06, 18 November 2020

OCA — Wed, 18 Nov 2020 08:06:03 GMT

←Older revision		Revision as of 08:06, 18 November 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ke5 is ON HOLD	+	The entry 7ke5 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7ke5" [edit=sysop:move=sysop]

OCA — Wed, 21 Oct 2020 06:51:54 GMT

Protected "7ke5" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:51, 21 October 2020

OCA: New page: '''Unreleased structure''' The entry 7ke5 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 21 Oct 2020 06:51:53 GMT

New page: '''Unreleased structure''' The entry 7ke5 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7ke5 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7ke5 - Revision history

OCA at 15:23, 18 October 2023

OCA at 08:06, 18 November 2020

OCA: Protected "7ke5" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7ke5 is ON HOLD Authors: Description: Category: Unreleased Structures