OCA at 15:26, 18 October 2023

OCA — Wed, 18 Oct 2023 15:26:20 GMT

←Older revision		Revision as of 15:26, 18 October 2023
Line 1:		Line 1:

-	====	+	==KEOPS tRNA modifying sub-complex of archaeal Cgi121 and tRNA==
-	<StructureSection load='7kjt' size='340' side='right'caption='[[7kjt]]' scene=''>	+	<StructureSection load='7kjt' size='340' side='right'caption='[[7kjt]], [[Resolution\|resolution]] 3.34Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7kjt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KJT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KJT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7kjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kjt OCA], [~~http~~://pdbe.org/7kjt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7kjt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7kjt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7kjt ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.34Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kjt OCA], [https://pdbe.org/7kjt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kjt RCSB], [https://www.ebi.ac.uk/pdbsum/7kjt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kjt ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CG121_METJA CG121_METJA] Component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, a step in the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Cgi121 stimulates Bud32 kinase activity via an activation of Bud32 autophosphorylation.<ref>PMID:18951093</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The KEOPS complex, which is conserved across archaea and eukaryotes, is composed of four core subunits; Pcc1, Kae1, Bud32 and Cgi121. KEOPS is crucial for the fitness of all organisms examined. In humans, pathogenic mutations in KEOPS genes lead to Galloway-Mowat syndrome, an autosomal-recessive disease causing childhood lethality. Kae1 catalyzes the universal and essential tRNA modification N(6)-threonylcarbamoyl adenosine, but the precise roles of all other KEOPS subunits remain an enigma. Here we show using structure-guided studies that Cgi121 recruits tRNA to KEOPS by binding to its 3' CCA tail. A composite model of KEOPS bound to tRNA reveals that all KEOPS subunits form an extended tRNA-binding surface that we have validated in vitro and in vivo to mediate the interaction with the tRNA substrate and its modification. These findings provide a framework for understanding the inner workings of KEOPS and delineate why all KEOPS subunits are essential.
		+
		+	A substrate binding model for the KEOPS tRNA modifying complex.,Beenstock J, Ona SM, Porat J, Orlicky S, Wan LCK, Ceccarelli DF, Maisonneuve P, Szilard RK, Yin Z, Setiaputra D, Mao DYL, Khan M, Raval S, Schriemer DC, Bayfield MA, Durocher D, Sicheri F Nat Commun. 2020 Dec 4;11(1):6233. doi: 10.1038/s41467-020-19990-5. PMID:33277478<ref>PMID:33277478</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7kjt" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Methanocaldococcus jannaschii]]
		+	[[Category: Beenstock J]]
		+	[[Category: Ceccarelli DF]]
		+	[[Category: Mao DYL]]
		+	[[Category: Sicheri F]]

OCA at 07:57, 2 December 2020

OCA — Wed, 02 Dec 2020 07:57:59 GMT

←Older revision		Revision as of 07:57, 2 December 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7kjt ~~is ON HOLD~~	+	====
-		+	<StructureSection load='7kjt' size='340' side='right'caption='[[7kjt]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7kjt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kjt OCA], [http://pdbe.org/7kjt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7kjt RCSB], [http://www.ebi.ac.uk/pdbsum/7kjt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7kjt ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA: Protected "7kjt" [edit=sysop:move=sysop]

OCA — Wed, 04 Nov 2020 05:39:50 GMT

Protected "7kjt" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:39, 4 November 2020

OCA: New page: '''Unreleased structure''' The entry 7kjt is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 04 Nov 2020 05:39:49 GMT

New page: '''Unreleased structure''' The entry 7kjt is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7kjt is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7kjt - Revision history

OCA at 15:26, 18 October 2023

OCA at 07:57, 2 December 2020

OCA: Protected "7kjt" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7kjt is ON HOLD Authors: Description: Category: Unreleased Structures