7ksm - Revision history

OCA at 19:36, 29 May 2024

OCA — Wed, 29 May 2024 19:36:13 GMT

←Older revision		Revision as of 19:36, 29 May 2024
Line 1:		Line 1:

-	====	+	==Human mitochondrial LONP1 with endogenous substrate==
-	<StructureSection load='7ksm' size='340' side='right'caption='[[7ksm]]' scene=''>	+	<StructureSection load='7ksm' size='340' side='right'caption='[[7ksm]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ksm]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_BL21(DE3) Escherichia coli BL21(DE3)] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KSM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ksm OCA], [https://pdbe.org/7ksm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ksm RCSB], [https://www.ebi.ac.uk/pdbsum/7ksm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ksm ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ksm OCA], [https://pdbe.org/7ksm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ksm RCSB], [https://www.ebi.ac.uk/pdbsum/7ksm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ksm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/LONM_HUMAN LONM_HUMAN] ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial promoters and RNA in a single-stranded, site-specific, and strand-specific manner. May regulate mitochondrial DNA replication and/or gene expression using site-specific, single-stranded DNA binding to target the degradation of regulatory proteins binding to adjacent sites in mitochondrial promoters. Endogenous substrates include mitochondrial steroidogenic acute regulatory (StAR) protein.[HAMAP-Rule:MF_03120]<ref>PMID:12198491</ref> <ref>PMID:15870080</ref> <ref>PMID:17420247</ref> <ref>PMID:8248235</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The human mitochondrial AAA+ protein LONP1 is a critical quality control protease involved in regulating diverse aspects of mitochondrial biology including proteostasis, electron transport chain activity, and mitochondrial transcription. As such, genetic or aging-associated imbalances in LONP1 activity are implicated in pathologic mitochondrial dysfunction associated with numerous human diseases. Despite this importance, the molecular basis for LONP1-dependent proteolytic activity remains poorly defined. Here, we solved cryo-electron microscopy structures of human LONP1 to reveal the underlying molecular mechanisms governing substrate proteolysis. We show that, like bacterial Lon, human LONP1 adopts both an open and closed spiral staircase orientation dictated by the presence of substrate and nucleotide. Unlike bacterial Lon, human LONP1 contains a second spiral staircase within its ATPase domain that engages substrate as it is translocated toward the proteolytic chamber. Intriguingly, and in contrast to its bacterial ortholog, substrate binding within the central ATPase channel of LONP1 alone is insufficient to induce the activated conformation of the protease domains. To successfully induce the active protease conformation in substrate-bound LONP1, substrate binding within the protease active site is necessary, which we demonstrate by adding bortezomib, a peptidomimetic active site inhibitor of LONP1. These results suggest LONP1 can decouple ATPase and protease activities depending on whether AAA+ or both AAA+ and protease domains bind substrate. Importantly, our structures provide a molecular framework to define the critical importance of LONP1 in regulating mitochondrial proteostasis in health and disease.
		+
		+	Structures of the human LONP1 protease reveal regulatory steps involved in protease activation.,Shin M, Watson ER, Song AS, Mindrebo JT, Novick SJ, Griffin PR, Wiseman RL, Lander GC Nat Commun. 2021 May 28;12(1):3239. doi: 10.1038/s41467-021-23495-0. PMID:34050165<ref>PMID:34050165</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ksm" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Griffin P]]
		+	[[Category: Lander GC]]
		+	[[Category: Mindrebo JT]]
		+	[[Category: Novick SR]]
		+	[[Category: Shin M]]
		+	[[Category: Song AS]]
		+	[[Category: Watson ER]]
		+	[[Category: Wiseman RL]]

OCA at 15:03, 3 March 2021

OCA — Wed, 03 Mar 2021 15:03:48 GMT

←Older revision		Revision as of 15:03, 3 March 2021
Line 3:		Line 3:
	<StructureSection load='7ksm' size='340' side='right'caption='[[7ksm]]' scene=''>		<StructureSection load='7ksm' size='340' side='right'caption='[[7ksm]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=7ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ksm OCA], [~~http~~://pdbe.org/7ksm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=7ksm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/7ksm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=7ksm ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ksm OCA], [https://pdbe.org/7ksm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ksm RCSB], [https://www.ebi.ac.uk/pdbsum/7ksm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ksm ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA: Protected "7ksm" [edit=sysop:move=sysop]

OCA — Wed, 02 Dec 2020 07:58:10 GMT

Protected "7ksm" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:58, 2 December 2020

OCA: New page: ==== == Structural highlights ==
Full crystallographic information is availabl...
OCA — Wed, 02 Dec 2020 07:58:08 GMT

New page: ==== <StructureSection load='7ksm' size='340' side='right'caption='7ksm' scene=''> == Structural highlights == <table><tr><td colspan='2'>Full crystallographic information is availabl...

New page

====
<StructureSection load='7ksm' size='340' side='right'caption='[[7ksm]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ksm OCA], [http://pdbe.org/7ksm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7ksm RCSB], [http://www.ebi.ac.uk/pdbsum/7ksm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7ksm ProSAT]</span></td></tr>
</table>
TOC
</StructureSection>
[[Category: Large Structures]]
[[Category: Z-disk]]