OCA at 15:32, 18 October 2023

OCA — Wed, 18 Oct 2023 15:32:48 GMT

←Older revision		Revision as of 15:32, 18 October 2023
Line 1:		Line 1:

	==Crystal structure of the BlCel48B from Bacillus licheniformis==		==Crystal structure of the BlCel48B from Bacillus licheniformis==
-	<StructureSection load='7kw6' size='340' side='right'caption='[[7kw6]]' scene=''>	+	<StructureSection load='7kw6' size='340' side='right'caption='[[7kw6]], [[Resolution\|resolution]] 1.68Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KW6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KW6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7kw6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_licheniformis Bacillus licheniformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KW6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KW6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kw6 OCA], [https://pdbe.org/7kw6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kw6 RCSB], [https://www.ebi.ac.uk/pdbsum/7kw6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kw6 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.68Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene>, <scene name='pdbligand=PRD_900011:beta-cellotetraose'>PRD_900011</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kw6 OCA], [https://pdbe.org/7kw6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kw6 RCSB], [https://www.ebi.ac.uk/pdbsum/7kw6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kw6 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q65JI8_BACLD Q65JI8_BACLD]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Processive cellulases are highly efficient molecular engines involved in the cellulose breakdown process. However, the mechanism that processive bacterial enzymes utilize to recruit and retain cellulose strands in the catalytic site remains poorly understood. Here, integrated enzymatic assays, protein crystallography and computational approaches were combined to study the enzymatic properties of the processive BlCel48B cellulase from Bacillus licheniformis. Hydrolytic efficiency, substrate binding affinity, cleavage patterns, and the apparent processivity of bacterial BlCel48B are significantly impacted by the cellulose size and its surface morphology. BlCel48B crystallographic structure was solved with ligands spanning -5 to -2 and +1 to +2 subsites. Statistical coupling analysis and molecular dynamics show that co-evolved residues on active site are critical for stabilizing ligands in the catalytic tunnel. Our results provide mechanistic insights into BlCel48B molecular-level determinants of activity, substrate binding, and processivity on insoluble cellulose, thus shedding light on structure-activity correlations of GH48 family members in general.
		+
		+	Impact of cellulose properties on enzymatic degradation by bacterial GH48 enzymes: Structural and mechanistic insights from processive Bacillus licheniformis Cel48B cellulase.,Araujo EA, Dias AHS, Kadowaki MAS, Piyadov V, Pellegrini VOA, Urio MB, Ramos LP, Skaf MS, Polikarpov I Carbohydr Polym. 2021 Jul 15;264:118059. doi: 10.1016/j.carbpol.2021.118059. Epub, 2021 Apr 9. PMID:33910709<ref>PMID:33910709</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7kw6" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus licheniformis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Araujo EA]]		[[Category: Araujo EA]]
	[[Category: Polikarpov I]]		[[Category: Polikarpov I]]

OCA at 07:28, 19 January 2022

OCA — Wed, 19 Jan 2022 07:28:39 GMT

←Older revision		Revision as of 07:28, 19 January 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7kw6 ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of the BlCel48B from Bacillus licheniformis==
-		+	<StructureSection load='7kw6' size='340' side='right'caption='[[7kw6]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7KW6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7KW6 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7kw6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7kw6 OCA], [https://pdbe.org/7kw6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7kw6 RCSB], [https://www.ebi.ac.uk/pdbsum/7kw6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7kw6 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Araujo EA]]
		+	[[Category: Polikarpov I]]

OCA at 05:46, 6 January 2021

OCA — Wed, 06 Jan 2021 05:46:58 GMT

←Older revision		Revision as of 05:46, 6 January 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7kw6 is ON HOLD	+	The entry 7kw6 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7kw6" [edit=sysop:move=sysop]

OCA — Wed, 09 Dec 2020 05:16:14 GMT

Protected "7kw6" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:16, 9 December 2020

OCA: New page: '''Unreleased structure''' The entry 7kw6 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 09 Dec 2020 05:16:13 GMT

New page: '''Unreleased structure''' The entry 7kw6 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7kw6 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7kw6 - Revision history

OCA at 15:32, 18 October 2023

OCA at 07:28, 19 January 2022

OCA at 05:46, 6 January 2021

OCA: Protected "7kw6" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7kw6 is ON HOLD Authors: Description: Category: Unreleased Structures