7l19 - Revision history

OCA at 09:19, 25 October 2023

OCA — Wed, 25 Oct 2023 09:19:42 GMT

←Older revision		Revision as of 09:19, 25 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7l19]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacter_soli_ATCC_BAA-2102 Enterobacter soli ATCC BAA-2102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L19 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7l19]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacter_soli_ATCC_BAA-2102 Enterobacter soli ATCC BAA-2102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L19 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.77Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l19 OCA], [https://pdbe.org/7l19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l19 RCSB], [https://www.ebi.ac.uk/pdbsum/7l19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l19 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l19 OCA], [https://pdbe.org/7l19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l19 RCSB], [https://www.ebi.ac.uk/pdbsum/7l19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l19 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:21, 24 November 2022

OCA — Thu, 24 Nov 2022 10:21:32 GMT

←Older revision		Revision as of 10:21, 24 November 2022
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	==Crystal structure of the MarR family transcriptional regulator from Enterobacter soli strain LF7 bound to Indole 3 acetic acid==		==Crystal structure of the MarR family transcriptional regulator from Enterobacter soli strain LF7 bound to Indole 3 acetic acid==
-	<StructureSection load='7l19' size='340' side='right'caption='[[7l19]]' scene=''>	+	<StructureSection load='7l19' size='340' side='right'caption='[[7l19]], [[Resolution\|resolution]] 2.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L19 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7l19]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacter_soli_ATCC_BAA-2102 Enterobacter soli ATCC BAA-2102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L19 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l19 OCA], [https://pdbe.org/7l19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l19 RCSB], [https://www.ebi.ac.uk/pdbsum/7l19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l19 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IAC:1H-INDOL-3-YLACETIC+ACID'>IAC</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l19 OCA], [https://pdbe.org/7l19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l19 RCSB], [https://www.ebi.ac.uk/pdbsum/7l19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l19 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A198GGN0_9ENTR A0A198GGN0_9ENTR]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Chemical signalling in the plant microbiome can have drastic effects on microbial community structure, and on host growth and development. Previously, we demonstrated that the auxin metabolic signal interference performed by the bacterial genus Variovorax via an auxin degradation locus was essential for maintaining stereotypic root development in an ecologically relevant bacterial synthetic community. Here, we dissect the Variovorax auxin degradation locus to define the genes iadDE as necessary and sufficient for indole-3-acetic acid (IAA) degradation and signal interference. We determine the crystal structures and binding properties of the operon's MarR-family repressor with IAA and other auxins. Auxin degradation operons were identified across the bacterial tree of life and we define two distinct types on the basis of gene content and metabolic products: iac-like and iad-like. The structures of MarRs from representatives of each auxin degradation operon type establish that each has distinct IAA-binding pockets. Comparison of representative IAA-degrading strains from diverse bacterial genera colonizing Arabidopsis plants show that while all degrade IAA, only strains containing iad-like auxin-degrading operons interfere with auxin signalling in a complex synthetic community context. This suggests that iad-like operon-containing bacterial strains, including Variovorax species, play a key ecological role in modulating auxins in the plant microbiome.
		+
		+	Diverse MarR bacterial regulators of auxin catabolism in the plant microbiome.,Conway JM, Walton WG, Salas-Gonzalez I, Law TF, Lindberg CA, Crook LE, Kosina SM, Fitzpatrick CR, Lietzan AD, Northen TR, Jones CD, Finkel OM, Redinbo MR, Dangl JL Nat Microbiol. 2022 Nov;7(11):1817-1833. doi: 10.1038/s41564-022-01244-3. Epub , 2022 Oct 20. PMID:36266335<ref>PMID:36266335</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7l19" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Enterobacter soli ATCC BAA-2102]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Dangl JL]]		[[Category: Dangl JL]]

OCA at 15:25, 22 December 2021

OCA — Wed, 22 Dec 2021 15:25:43 GMT

←Older revision		Revision as of 15:25, 22 December 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 7l19 is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of the MarR family transcriptional regulator from Enterobacter soli strain LF7 bound to Indole 3 acetic acid==
-		+	<StructureSection load='7l19' size='340' side='right'caption='[[7l19]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L19 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l19 OCA], [https://pdbe.org/7l19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l19 RCSB], [https://www.ebi.ac.uk/pdbsum/7l19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l19 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Dangl JL]]
		+	[[Category: Lietzan AD]]
		+	[[Category: Redinbo MR]]
		+	[[Category: Walton WG]]

OCA at 09:25, 3 February 2021

OCA — Wed, 03 Feb 2021 09:25:00 GMT

←Older revision		Revision as of 09:25, 3 February 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7l19 is ON HOLD	+	The entry 7l19 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7l19" [edit=sysop:move=sysop]

OCA — Thu, 24 Dec 2020 08:07:56 GMT

Protected "7l19" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:07, 24 December 2020

OCA: New page: '''Unreleased structure''' The entry 7l19 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 24 Dec 2020 08:07:54 GMT

New page: '''Unreleased structure''' The entry 7l19 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7l19 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]