7l1z - Revision history

OCA at 15:36, 18 October 2023

OCA — Wed, 18 Oct 2023 15:36:17 GMT

←Older revision		Revision as of 15:36, 18 October 2023
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	<StructureSection load='7l1z' size='340' side='right'caption='[[7l1z]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='7l1z' size='340' side='right'caption='[[7l1z]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7l1z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Miscellaneous_nucleic_acid Miscellaneous nucleic acid~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L1Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7l1z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L1Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.05Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l1z OCA], [https://pdbe.org/7l1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l1z RCSB], [https://www.ebi.ac.uk/pdbsum/7l1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l1z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l1z OCA], [https://pdbe.org/7l1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l1z RCSB], [https://www.ebi.ac.uk/pdbsum/7l1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l1z ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A2H4TGG5_9BACT A0A2H4TGG5_9BACT]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Miscellaneous nucleic acid~~]]	+	[[Category: Unidentified]]
-	[[Category: Briganti, L]]	+	[[Category: Briganti L]]
-	[[Category: Evangelista~~, D E~~]]	+	[[Category: Evangelista DE]]
-	[[Category: Kadowaki~~, M A.S~~]]	+	[[Category: Kadowaki MAS]]
-	[[Category: Polikarpov, I]]	+	[[Category: Polikarpov I]]
-	~~[[Category: 4-xylobiosidase]]~~	+
-	~~[[Category: Exo-b-1]]~~	+
-	~~[[Category: Gh11]]~~	+
-	~~[[Category: Glycoside hydrolase family 11]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 06:17, 11 August 2021

OCA — Wed, 11 Aug 2021 06:17:27 GMT

←Older revision		Revision as of 06:17, 11 August 2021
Line 1:		Line 1:

	==Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium - NT-truncated form==		==Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium - NT-truncated form==
-	<StructureSection load='7l1z' size='340' side='right'caption='[[7l1z]]' scene=''>	+	<StructureSection load='7l1z' size='340' side='right'caption='[[7l1z]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L1Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7l1z]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L1Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l1z OCA], [https://pdbe.org/7l1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l1z RCSB], [https://www.ebi.ac.uk/pdbsum/7l1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l1z ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l1z OCA], [https://pdbe.org/7l1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l1z RCSB], [https://www.ebi.ac.uk/pdbsum/7l1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l1z ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The heteropolysaccharide xylan is a valuable source of sustainable chemicals and materials from renewable biomass sources. A complete hydrolysis of this major hemicellulose component requires a diverse set of enzymes including endo-beta-1,4-xylanases, beta-xylosidases, acetylxylan esterases, alpha-l-arabinofuranosidases, and alpha-glucuronidases. Notably, the most studied xylanases from glycoside hydrolase family 11 (GH11) have exclusively been endo-beta-1,4- and beta-1,3-xylanases. However, a recent analysis of a metatranscriptome library from a microbial lignocellulose community revealed GH11 enzymes capable of releasing solely xylobiose from xylan. Although initial biochemical studies clearly indicated their xylobiohydrolase mode of action, the structural features that drive this new activity still remained unclear. It was also not clear whether the enzymes acted on the reducing or nonreducing end of the substrate. Here, we solved the crystal structure of MetXyn11 in the apo and xylobiose-bound forms. The structure of MetXyn11 revealed the molecular features that explain the observed pattern on xylooligosaccharides released by this nonreducing end xylobiohydrolase.
		+
		+	Unlocking the structural features for the xylobiohydrolase activity of an unusual GH11 member identified in a compost-derived consortium.,Kadowaki MAS, Briganti L, Evangelista DE, Echevarria-Poza A, Tryfona T, Pellegrini VOA, Nakayama DG, Dupree P, Polikarpov I Biotechnol Bioeng. 2021 Jul 7. doi: 10.1002/bit.27880. PMID:34232504<ref>PMID:34232504</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7l1z" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Briganti L]]	+	[[Category: Miscellaneous nucleic acid]]
-	[[Category: Evangelista DE]]	+	[[Category: Briganti, L]]
-	[[Category: Kadowaki ~~MAS~~]]	+	[[Category: Evangelista, D E]]
-	[[Category: Polikarpov I]]	+	[[Category: Kadowaki, M A.S]]
		+	[[Category: Polikarpov, I]]
		+	[[Category: 4-xylobiosidase]]
		+	[[Category: Exo-b-1]]
		+	[[Category: Gh11]]
		+	[[Category: Glycoside hydrolase family 11]]
		+	[[Category: Hydrolase]]

OCA at 10:19, 4 August 2021

OCA — Wed, 04 Aug 2021 10:19:16 GMT

←Older revision		Revision as of 10:19, 4 August 2021
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-	'''Unreleased structure'''

-	~~The entry 7l1z is ON HOLD until Paper Publication~~	+	==Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium - NT-truncated form==
-		+	<StructureSection load='7l1z' size='340' side='right'caption='[[7l1z]]' scene=''>
-	~~Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L1Z FirstGlance]. <br>
-	~~Description:~~ Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium -NT-truncated form	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l1z OCA], [https://pdbe.org/7l1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l1z RCSB], [https://www.ebi.ac.uk/pdbsum/7l1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l1z ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Briganti, L]]	+	__TOC__
-	[[Category: ~~Kadowaki, M.A.S~~]]	+	</StructureSection>
-	[[Category: ~~Evangelista, D.E~~]]	+	[[Category: Large Structures]]
-	[[Category: Polikarpov, I]]	+	[[Category: Briganti L]]
		+	[[Category: Evangelista DE]]
		+	[[Category: Kadowaki MAS]]
		+	[[Category: Polikarpov I]]

OCA at 06:51, 20 January 2021

OCA — Wed, 20 Jan 2021 06:51:57 GMT

←Older revision		Revision as of 06:51, 20 January 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7l1z is ON HOLD	+	The entry 7l1z is ON HOLD until Paper Publication

	Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E.		Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E.

OCA at 05:28, 30 December 2020

OCA — Wed, 30 Dec 2020 05:28:19 GMT

←Older revision		Revision as of 05:28, 30 December 2020
Line 5:		Line 5:
	Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E.		Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E.

-	Description: Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium -NT-truncated form.	+	Description: Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium -NT-truncated form
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Evangelista, D.E]]
-	[[Category: Polikarpov, I]]
	[[Category: Briganti, L]]		[[Category: Briganti, L]]
	[[Category: Kadowaki, M.A.S]]		[[Category: Kadowaki, M.A.S]]
		+	[[Category: Evangelista, D.E]]
		+	[[Category: Polikarpov, I]]

OCA: Protected "7l1z" [edit=sysop:move=sysop]

OCA — Thu, 24 Dec 2020 08:10:20 GMT

Protected "7l1z" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:10, 24 December 2020

OCA: New page: '''Unreleased structure''' The entry 7l1z is ON HOLD Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E. Description: Unlocking the structural features for the e...

OCA — Thu, 24 Dec 2020 08:10:19 GMT

New page: '''Unreleased structure''' The entry 7l1z is ON HOLD Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E. Description: Unlocking the structural features for the e...

New page

'''Unreleased structure'''

The entry 7l1z is ON HOLD

Authors: Kadowaki, M.A.S., Polikarpov, I., Briganti, L., Evangelista, D.E.

Description: Unlocking the structural features for the exo-xylobiosidase activity of an unusual GH11 member identified in a compost-derived consortium -NT-truncated form.
[[Category: Unreleased Structures]]
[[Category: Evangelista, D.E]]
[[Category: Polikarpov, I]]
[[Category: Briganti, L]]
[[Category: Kadowaki, M.A.S]]