7l59 - Revision history

OCA at 15:37, 18 October 2023

OCA — Wed, 18 Oct 2023 15:37:58 GMT

←Older revision		Revision as of 15:37, 18 October 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7l59]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris_str._8004 Xanthomonas campestris pv. campestris str. 8004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7l59]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris_str._8004 Xanthomonas campestris pv. campestris str. 8004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.68Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/BPHY_XANC8 BPHY_XANC8]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: far-red light (733 nm) converts protein to the red-absorbing (Pr) form, while red light (630 nm) partly converts the protein to the far-red-absorbing (Pfr) form (PubMed:27107635). Regulates virulence of X.campestris pv. campestris on its host plants, perhaps by fine-tuning expression to ambient light levels and/or spatial cues (PubMed:27621284). The Pr form may sense light and partially inhibit virulence; in the dark (Pfr form) biofilm and xanathan production rise and bacteria are more virulent (PubMed:27621284). Strains overexpressing this protein have significantly decreased amounts of extracellular beta-1,4-endoglucanase, produce less xanthin and have decreased transcription of genes involved in virulence such as endoglucanases, type 2 secretion systems, xanthan production and flagellar-dependent motility (PubMed:27621284).<ref>PMID:27107635</ref> <ref>PMID:27621284</ref> <ref>PMID:27621284</ref>	+	[https://www.uniprot.org/uniprot/BPHY_XANC8 BPHY_XANC8] Photoreceptor which exists in two forms that are reversibly interconvertible by light: far-red light (733 nm) converts protein to the red-absorbing (Pr) form, while red light (630 nm) partly converts the protein to the far-red-absorbing (Pfr) form (PubMed:27107635). Regulates virulence of X.campestris pv. campestris on its host plants, perhaps by fine-tuning expression to ambient light levels and/or spatial cues (PubMed:27621284). The Pr form may sense light and partially inhibit virulence; in the dark (Pfr form) biofilm and xanathan production rise and bacteria are more virulent (PubMed:27621284). Strains overexpressing this protein have significantly decreased amounts of extracellular beta-1,4-endoglucanase, produce less xanthin and have decreased transcription of genes involved in virulence such as endoglucanases, type 2 secretion systems, xanthan production and flagellar-dependent motility (PubMed:27621284).<ref>PMID:27107635</ref> <ref>PMID:27621284</ref> <ref>PMID:27621284</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 06:22, 8 September 2022

OCA — Thu, 08 Sep 2022 06:22:51 GMT

←Older revision		Revision as of 06:22, 8 September 2022
Line 3:		Line 3:
	<StructureSection load='7l59' size='340' side='right'caption='[[7l59]], [[Resolution\|resolution]] 2.68Å' scene=''>		<StructureSection load='7l59' size='340' side='right'caption='[[7l59]], [[Resolution\|resolution]] 2.68Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7l59]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7l59]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris_pv._campestris_str._8004 Xanthomonas campestris pv. campestris str. 8004]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/BPHY_XANC8 BPHY_XANC8]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: far-red light (733 nm) converts protein to the red-absorbing (Pr) form, while red light (630 nm) partly converts the protein to the far-red-absorbing (Pfr) form (PubMed:27107635). Regulates virulence of X.campestris pv. campestris on its host plants, perhaps by fine-tuning expression to ambient light levels and/or spatial cues (PubMed:27621284). The Pr form may sense light and partially inhibit virulence; in the dark (Pfr form) biofilm and xanathan production rise and bacteria are more virulent (PubMed:27621284). Strains overexpressing this protein have significantly decreased amounts of extracellular beta-1,4-endoglucanase, produce less xanthin and have decreased transcription of genes involved in virulence such as endoglucanases, type 2 secretion systems, xanthan production and flagellar-dependent motility (PubMed:27621284).<ref>PMID:27107635</ref> <ref>PMID:27621284</ref> <ref>PMID:27621284</ref>	+	[[https://www.uniprot.org/uniprot/BPHY_XANC8 BPHY_XANC8]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: far-red light (733 nm) converts protein to the red-absorbing (Pr) form, while red light (630 nm) partly converts the protein to the far-red-absorbing (Pfr) form (PubMed:27107635). Regulates virulence of X.campestris pv. campestris on its host plants, perhaps by fine-tuning expression to ambient light levels and/or spatial cues (PubMed:27621284). The Pr form may sense light and partially inhibit virulence; in the dark (Pfr form) biofilm and xanathan production rise and bacteria are more virulent (PubMed:27621284). Strains overexpressing this protein have significantly decreased amounts of extracellular beta-1,4-endoglucanase, produce less xanthin and have decreased transcription of genes involved in virulence such as endoglucanases, type 2 secretion systems, xanthan production and flagellar-dependent motility (PubMed:27621284).<ref>PMID:27107635</ref> <ref>PMID:27621284</ref> <ref>PMID:27621284</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Antelo, G]]	+	[[Category: Xanthomonas campestris pv. campestris str. 8004]]
-	[[Category: Bonomi~~, H R~~]]	+	[[Category: Antelo G]]
-	[[Category: Goldbaum~~, F A~~]]	+	[[Category: Bonomi HR]]
-	[[Category: Klinke, S]]	+	[[Category: Goldbaum FA]]
-	[[Category: Otero~~, L H~~]]	+	[[Category: Klinke S]]
-	[[Category: Rinaldi, J]]	+	[[Category: Otero LH]]
-	[[Category: Sanchez-Lamas, M]]	+	[[Category: Rinaldi J]]
-	~~[[Category: Bacterial protein]]~~	+	[[Category: Sanchez-Lamas M]]
-	~~[[Category: Photoreceptor]]~~	+
-	~~[[Category: Photosensor]]~~	+
-	~~[[Category: Phytochrome]]~~	+
-	~~[[Category: Phytopathogen]]~~	+
-	~~[[Category: Red/far-red light]]~~	+
-	~~[[Category: Signal transduction]]~~	+
-	~~[[Category: Signaling protein~~]]	+

OCA at 05:23, 13 July 2022

OCA — Wed, 13 Jul 2022 05:23:45 GMT

←Older revision		Revision as of 05:23, 13 July 2022
Line 1:		Line 1:

	==Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP-G454E variant from Xanthomonas campestris in the Pfr state==		==Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP-G454E variant from Xanthomonas campestris in the Pfr state==
-	<StructureSection load='7l59' size='340' side='right'caption='[[7l59]]' scene=''>	+	<StructureSection load='7l59' size='340' side='right'caption='[[7l59]], [[Resolution\|resolution]] 2.68Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7l59]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/BPHY_XANC8 BPHY_XANC8]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: far-red light (733 nm) converts protein to the red-absorbing (Pr) form, while red light (630 nm) partly converts the protein to the far-red-absorbing (Pfr) form (PubMed:27107635). Regulates virulence of X.campestris pv. campestris on its host plants, perhaps by fine-tuning expression to ambient light levels and/or spatial cues (PubMed:27621284). The Pr form may sense light and partially inhibit virulence; in the dark (Pfr form) biofilm and xanathan production rise and bacteria are more virulent (PubMed:27621284). Strains overexpressing this protein have significantly decreased amounts of extracellular beta-1,4-endoglucanase, produce less xanthin and have decreased transcription of genes involved in virulence such as endoglucanases, type 2 secretion systems, xanthan production and flagellar-dependent motility (PubMed:27621284).<ref>PMID:27107635</ref> <ref>PMID:27621284</ref> <ref>PMID:27621284</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	[Figure: see text].
		+
		+	Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level.,Otero LH, Foscaldi S, Antelo GT, Rosano GL, Sirigu S, Klinke S, Defelipe LA, Sanchez-Lamas M, Battocchio G, Conforte V, Vojnov AA, Chavas LMG, Goldbaum FA, Mroginski MA, Rinaldi J, Bonomi HR Sci Adv. 2021 Nov 26;7(48):eabh1097. doi: 10.1126/sciadv.abh1097. Epub 2021 Nov, 24. PMID:34818032<ref>PMID:34818032</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7l59" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Antelo G]]	+	[[Category: Antelo, G]]
-	[[Category: Bonomi HR]]	+	[[Category: Bonomi, H R]]
-	[[Category: Goldbaum FA]]	+	[[Category: Goldbaum, F A]]
-	[[Category: Klinke S]]	+	[[Category: Klinke, S]]
-	[[Category: Otero LH]]	+	[[Category: Otero, L H]]
-	[[Category: Rinaldi J]]	+	[[Category: Rinaldi, J]]
-	[[Category: Sanchez-Lamas M]]	+	[[Category: Sanchez-Lamas, M]]
		+	[[Category: Bacterial protein]]
		+	[[Category: Photoreceptor]]
		+	[[Category: Photosensor]]
		+	[[Category: Phytochrome]]
		+	[[Category: Phytopathogen]]
		+	[[Category: Red/far-red light]]
		+	[[Category: Signal transduction]]
		+	[[Category: Signaling protein]]

OCA at 14:08, 29 December 2021

OCA — Wed, 29 Dec 2021 14:08:54 GMT

←Older revision		Revision as of 14:08, 29 December 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7l59 is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP-G454E variant from Xanthomonas campestris in the Pfr state==
-		+	<StructureSection load='7l59' size='340' side='right'caption='[[7l59]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7L59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7L59 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7l59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7l59 OCA], [https://pdbe.org/7l59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7l59 RCSB], [https://www.ebi.ac.uk/pdbsum/7l59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7l59 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Antelo G]]
		+	[[Category: Bonomi HR]]
		+	[[Category: Goldbaum FA]]
		+	[[Category: Klinke S]]
		+	[[Category: Otero LH]]
		+	[[Category: Rinaldi J]]
		+	[[Category: Sanchez-Lamas M]]

OCA: Protected "7l59" [edit=sysop:move=sysop]

OCA — Wed, 30 Dec 2020 05:31:15 GMT

Protected "7l59" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:31, 30 December 2020

OCA: New page: '''Unreleased structure''' The entry 7l59 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 30 Dec 2020 05:31:14 GMT

New page: '''Unreleased structure''' The entry 7l59 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7l59 is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]