7liw - Revision history

OCA at 19:38, 29 May 2024

OCA — Wed, 29 May 2024 19:38:16 GMT

←Older revision		Revision as of 19:38, 29 May 2024
Line 3:		Line 3:
	<StructureSection load='7liw' size='340' side='right'caption='[[7liw]], [[Resolution\|resolution]] 2.85Å' scene=''>		<StructureSection load='7liw' size='340' side='right'caption='[[7liw]], [[Resolution\|resolution]] 2.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[7liw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LIW FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LIW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=Y2A:(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic+acid'>Y2A</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 2.85Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6uuw\|6uuw]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=Y2A:(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic+acid'>Y2A</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ACLY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/ATP_citrate_synthase ATP citrate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.3.8 2.3.3.8] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7liw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7liw OCA], [https://pdbe.org/7liw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7liw RCSB], [https://www.ebi.ac.uk/pdbsum/7liw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7liw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7liw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7liw OCA], [https://pdbe.org/7liw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7liw RCSB], [https://www.ebi.ac.uk/pdbsum/7liw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7liw ProSAT]</span></td></tr>
	</table>		</table>
-	== ~~Function~~ ==	+	<div style="background-color:#fffaf0;">
-	~~[[https://www.uniprot.org/uniprot/ACLY_HUMAN ACLY_HUMAN]]~~ ATP ~~citrate~~-lyase ~~is the primary enzyme responsible for the synthesis of~~ cytosolic acetyl-CoA in many ~~tissues~~. ~~Has~~ a ~~central role~~ in ~~de novo lipid synthesis~~. ~~In nervous tissue it may be involved~~ in the ~~biosynthesis~~ of ~~acetylcholine~~.<ref>PMID:~~23932781~~</ref>	+	== Publication Abstract from PubMed ==
		+	ATP-citrate lyase (ACLY) synthesizes cytosolic acetyl coenzyme A (acetyl-CoA), a fundamental cellular building block. Accordingly, aberrant ACLY activity is observed in many diseases. Here we report cryo-EM structures of human ACLY, alone or bound to substrates or products. ACLY forms a homotetramer with a rigid citrate synthase homology (CSH) module, flanked by four flexible acetyl-CoA synthetase homology (ASH) domains; CoA is bound at the CSH-ASH interface in mutually exclusive productive or unproductive conformations. The structure of a catalytic mutant of ACLY in the presence of ATP, citrate and CoA substrates reveals a phospho-citryl-CoA intermediate in the ASH domain. ACLY with acetyl-CoA and oxaloacetate products shows the products bound in the ASH domain, with an additional oxaloacetate in the CSH domain, which could function in ACLY autoinhibition. These structures, which are supported by biochemical and biophysical data, challenge previous proposals of the ACLY catalytic mechanism and suggest additional therapeutic possibilities for ACLY-associated metabolic disorders.
		+
		+	Molecular basis for acetyl-CoA production by ATP-citrate lyase.,Wei X, Schultz K, Bazilevsky GA, Vogt A, Marmorstein R Nat Struct Mol Biol. 2019 Dec 23. pii: 10.1038/s41594-019-0351-6. doi:, 10.1038/s41594-019-0351-6. PMID:31873304<ref>PMID:31873304</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7liw" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[ATP-citrate synthase 3D structures\|ATP-citrate synthase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ATP citrate synthase]]
-	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Marmorstein, R]]	+	[[Category: Marmorstein R]]
-	[[Category: Wei, X]]	+	[[Category: Wei X]]
-	~~[[Category: Lyase~~]]	+

OCA at 06:33, 25 August 2021

OCA — Wed, 25 Aug 2021 06:33:06 GMT

←Older revision		Revision as of 06:33, 25 August 2021
Line 12:		Line 12:
	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/ACLY_HUMAN ACLY_HUMAN]] ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.<ref>PMID:23932781</ref>		[[https://www.uniprot.org/uniprot/ACLY_HUMAN ACLY_HUMAN]] ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.<ref>PMID:23932781</ref>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	ATP-citrate lyase (ACLY) synthesizes cytosolic acetyl coenzyme A (acetyl-CoA), a fundamental cellular building block. Accordingly, aberrant ACLY activity is observed in many diseases. Here we report cryo-EM structures of human ACLY, alone or bound to substrates or products. ACLY forms a homotetramer with a rigid citrate synthase homology (CSH) module, flanked by four flexible acetyl-CoA synthetase homology (ASH) domains; CoA is bound at the CSH-ASH interface in mutually exclusive productive or unproductive conformations. The structure of a catalytic mutant of ACLY in the presence of ATP, citrate and CoA substrates reveals a phospho-citryl-CoA intermediate in the ASH domain. ACLY with acetyl-CoA and oxaloacetate products shows the products bound in the ASH domain, with an additional oxaloacetate in the CSH domain, which could function in ACLY autoinhibition. These structures, which are supported by biochemical and biophysical data, challenge previous proposals of the ACLY catalytic mechanism and suggest additional therapeutic possibilities for ACLY-associated metabolic disorders.
-
-	Molecular basis for acetyl-CoA production by ATP-citrate lyase.,Wei X, Schultz K, Bazilevsky GA, Vogt A, Marmorstein R Nat Struct Mol Biol. 2019 Dec 23. pii: 10.1038/s41594-019-0351-6. doi:, 10.1038/s41594-019-0351-6. PMID:31873304<ref>PMID:31873304</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 7liw" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:52, 28 July 2021

OCA — Wed, 28 Jul 2021 10:52:39 GMT

←Older revision		Revision as of 10:52, 28 July 2021
Line 1:		Line 1:

	==Local refinement of human ATP citrate lyase E599Q mutant ASH domain==		==Local refinement of human ATP citrate lyase E599Q mutant ASH domain==
-	<StructureSection load='7liw' size='340' side='right'caption='[[7liw]]' scene=''>	+	<StructureSection load='7liw' size='340' side='right'caption='[[7liw]], [[Resolution\|resolution]] 2.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LIW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7liw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LIW FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7liw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7liw OCA], [https://pdbe.org/7liw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7liw RCSB], [https://www.ebi.ac.uk/pdbsum/7liw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7liw ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=Y2A:(2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic+acid'>Y2A</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6uuw\|6uuw]]</div></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ACLY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/ATP_citrate_synthase ATP citrate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.3.8 2.3.3.8] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7liw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7liw OCA], [https://pdbe.org/7liw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7liw RCSB], [https://www.ebi.ac.uk/pdbsum/7liw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7liw ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/ACLY_HUMAN ACLY_HUMAN]] ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.<ref>PMID:23932781</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ATP-citrate lyase (ACLY) synthesizes cytosolic acetyl coenzyme A (acetyl-CoA), a fundamental cellular building block. Accordingly, aberrant ACLY activity is observed in many diseases. Here we report cryo-EM structures of human ACLY, alone or bound to substrates or products. ACLY forms a homotetramer with a rigid citrate synthase homology (CSH) module, flanked by four flexible acetyl-CoA synthetase homology (ASH) domains; CoA is bound at the CSH-ASH interface in mutually exclusive productive or unproductive conformations. The structure of a catalytic mutant of ACLY in the presence of ATP, citrate and CoA substrates reveals a phospho-citryl-CoA intermediate in the ASH domain. ACLY with acetyl-CoA and oxaloacetate products shows the products bound in the ASH domain, with an additional oxaloacetate in the CSH domain, which could function in ACLY autoinhibition. These structures, which are supported by biochemical and biophysical data, challenge previous proposals of the ACLY catalytic mechanism and suggest additional therapeutic possibilities for ACLY-associated metabolic disorders.
		+
		+	Molecular basis for acetyl-CoA production by ATP-citrate lyase.,Wei X, Schultz K, Bazilevsky GA, Vogt A, Marmorstein R Nat Struct Mol Biol. 2019 Dec 23. pii: 10.1038/s41594-019-0351-6. doi:, 10.1038/s41594-019-0351-6. PMID:31873304<ref>PMID:31873304</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7liw" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: ATP citrate synthase]]
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Marmorstein R]]	+	[[Category: Marmorstein, R]]
-	[[Category: Wei X]]	+	[[Category: Wei, X]]
		+	[[Category: Lyase]]

OCA at 10:10, 19 May 2021

OCA — Wed, 19 May 2021 10:10:25 GMT

←Older revision		Revision as of 10:10, 19 May 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 7liw is ON HOLD until Paper Publication~~	+	==Local refinement of human ATP citrate lyase E599Q mutant ASH domain==
-		+	<StructureSection load='7liw' size='340' side='right'caption='[[7liw]]' scene=''>
-	~~Authors: Wei, X., Marmorstein, R.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LIW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LIW FirstGlance]. <br>
-	~~Description:~~ Local refinement of human ATP citrate lyase E599Q mutant ASH domain	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7liw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7liw OCA], [https://pdbe.org/7liw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7liw RCSB], [https://www.ebi.ac.uk/pdbsum/7liw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7liw ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[~~Category~~: ~~Wei~~, X]]	+	__TOC__
-	[[Category: Marmorstein, R]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Marmorstein R]]
		+	[[Category: Wei X]]

OCA at 05:38, 24 February 2021

OCA — Wed, 24 Feb 2021 05:38:09 GMT

←Older revision		Revision as of 05:38, 24 February 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7liw is ON HOLD	+	The entry 7liw is ON HOLD until Paper Publication

	Authors: Wei, X., Marmorstein, R.		Authors: Wei, X., Marmorstein, R.

OCA: Protected "7liw" [edit=sysop:move=sysop]

OCA — Wed, 03 Feb 2021 09:32:18 GMT

Protected "7liw" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:32, 3 February 2021

OCA: New page: '''Unreleased structure''' The entry 7liw is ON HOLD Authors: Wei, X., Marmorstein, R. Description: Local refinement of human ATP citrate lyase E599Q mutant ASH domain [[Category: Unre...

OCA — Wed, 03 Feb 2021 09:32:16 GMT

New page: '''Unreleased structure''' The entry 7liw is ON HOLD Authors: Wei, X., Marmorstein, R. Description: Local refinement of human ATP citrate lyase E599Q mutant ASH domain [[Category: Unre...

New page

'''Unreleased structure'''

The entry 7liw is ON HOLD

Authors: Wei, X., Marmorstein, R.

Description: Local refinement of human ATP citrate lyase E599Q mutant ASH domain
[[Category: Unreleased Structures]]
[[Category: Wei, X]]
[[Category: Marmorstein, R]]