OCA at 16:00, 18 October 2023

OCA — Wed, 18 Oct 2023 16:00:36 GMT

←Older revision		Revision as of 16:00, 18 October 2023
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-	====	+	==Crystal Structure of phospho-Rab8a with the RH2 domain (117-165) of RILPL2==
-	<StructureSection load='7lwb' size='340' side='right'caption='[[7lwb]]' scene=''>	+	<StructureSection load='7lwb' size='340' side='right'caption='[[7lwb]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7lwb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7LWB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7LWB FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7lwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7lwb OCA], [https://pdbe.org/7lwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7lwb RCSB], [https://www.ebi.ac.uk/pdbsum/7lwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7lwb ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7lwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7lwb OCA], [https://pdbe.org/7lwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7lwb RCSB], [https://www.ebi.ac.uk/pdbsum/7lwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7lwb ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RAB8A_HUMAN RAB8A_HUMAN] May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.<ref>PMID:20890297</ref> <ref>PMID:21282656</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Parkinson's-disease-associated LRRK2 is a multidomain Ser/Thr kinase that phosphorylates a subset of Rab GTPases to control their effector functions. Rab GTPases are the prime regulators of membrane trafficking in eukaryotic cells. Rabs exert their biological effects by recruitment of effector proteins to subcellular compartments via their Rab-binding domain (RBD). Effectors are modular and typically contain additional domains that regulate various aspects of vesicle formation, trafficking, fusion, and organelle dynamics. The RBD of effectors is typically an alpha-helical coiled coil that recognizes the GTP conformation of the switch 1 and switch 2 motifs of Rabs. LRRK2 phosphorylates Rab8a at T72 (pT72) of its switch 2 alpha-helix. This post-translational modification enables recruitment of RILPL2, an effector that regulates ciliogenesis in model cell lines. A newly identified RBD motif of RILPL2, termed the X-cap, has been shown to recognize the phosphate via direct interactions between an arginine residue (R132) and pT72 of Rab8a. Here, we show that a second distal arginine (R130) is also essential for phospho-Rab binding by RILPL2. Through structural, biophysical, and cellular studies, we find that R130 stabilizes the primary R132:pT72 salt bridge through favorable enthalpic contributions to the binding affinity. These findings may have implications for the mechanism by which LRRK2 activation leads to assembly of phospho-Rab complexes and subsequent control of their membrane trafficking functions in cells.
		+
		+	Dual arginine recognition of LRRK2 phosphorylated Rab GTPases.,Waschbusch D, Purlyte E, Khan AR Biophys J. 2021 Apr 20. pii: S0006-3495(21)00283-6. doi:, 10.1016/j.bpj.2021.03.030. PMID:33887226<ref>PMID:33887226</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7lwb" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ras-related protein Rab 3D structures\|Ras-related protein Rab 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Khan AR]]
		+	[[Category: Waschbusch D]]

OCA: Protected "7lwb" [edit=sysop:move=sysop]

OCA — Wed, 10 Mar 2021 17:24:20 GMT

Protected "7lwb" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:24, 10 March 2021

OCA: New page: ==== == Structural highlights ==
Full crystallographic information is availabl...
OCA — Wed, 10 Mar 2021 17:24:18 GMT

New page: ==== <StructureSection load='7lwb' size='340' side='right'caption='7lwb' scene=''> == Structural highlights == <table><tr><td colspan='2'>Full crystallographic information is availabl...

New page

====
<StructureSection load='7lwb' size='340' side='right'caption='[[7lwb]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7lwb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7lwb OCA], [https://pdbe.org/7lwb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7lwb RCSB], [https://www.ebi.ac.uk/pdbsum/7lwb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7lwb ProSAT]</span></td></tr>
</table>
TOC
</StructureSection>
[[Category: Large Structures]]
[[Category: Z-disk]]

7lwb - Revision history

OCA at 16:00, 18 October 2023

OCA: Protected "7lwb" [edit=sysop:move=sysop]