7m5s - Revision history

OCA: Replacing page with 'REMOVED: The PDB entry 7m5s was removed.'

OCA — Wed, 29 Mar 2023 06:33:42 GMT

Replacing page with 'REMOVED: The PDB entry 7m5s was removed.'

←Older revision		Revision as of 06:33, 29 March 2023
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-		+	REMOVED: The PDB entry 7m5s was removed.
-	~~==Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation==~~	+
-	~~<StructureSection load='7m5s' size='340' side='right'caption='[[7m5s]], [[Resolution\|resolution]] 3.26Å' scene=''>~~	+
-	~~== Structural highlights ==~~	+
-	~~<table><tr><td colspan='2'>[[7m5s]] is a 4 chain structure with sequence from [https~~://en.wikipedia.org/wiki/Human_alphaherpesvirus_1_strain_KOS Human alphaherpesvirus 1 strain KOS] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7M5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7M5S FirstGlance]. <br>	+
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GS:GUANOSINE-5-THIO-MONOPHOSPHATE'>GS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+
-	~~<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=~~7m5s ~~FirstGlance], [http://oca~~.weizmann.ac.il/oca-bin/ocaids?id=7m5s OCA], [https://pdbe.org/7m5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7m5s RCSB], [https://www.ebi.ac.uk/pdbsum/7m5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7m5s ProSAT]</span></td></tr>	+
-	~~</table>~~	+
-	~~== Function ==~~	+
-	[https://www.uniprot.org/uniprot/H9E937_HHV1 H9E937_HHV1] Replicates viral genomic DNA. The replication complex is composed of six viral proteins: the DNA polymerase, processivity factor, primase, primase-associated factor, helicase, and ssDNA-binding protein. Additionally, the polymerase contains an intrinsic ribonuclease H (RNase H) activity that specifically degrades RNA/DNA heteroduplexes or duplex DNA substrates in the 5' to 3' direction. Therefore, it can catalyze the excision of the RNA primers that initiate the synthesis of Okazaki fragments at a replication fork during viral DNA replication.[ARBA:ARBA00025601]	+
-	~~__TOC__~~	+
-	~~</StructureSection>~~	+
-	~~[[Category: Human alphaherpesvirus 1 strain KOS]]~~	+
-	~~[[Category: Large Structures]]~~	+
-	~~[[Category: Synthetic construct]]~~	+
-	~~[[Category: Abraham J]]~~	+
-	~~[[Category: Coen DM]]~~	+
-	~~[[Category: Hogle J]]~~	+
-	~~[[Category: Pan J]]~~	+
-	~~[[Category: Shankar S]]~~	+
-	~~[[Category: Yang P]]~~	+

OCA at 07:14, 22 March 2023

OCA — Wed, 22 Mar 2023 07:14:24 GMT

←Older revision		Revision as of 07:14, 22 March 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 7m5s is ~~ON HOLD until Paper Publication~~	+	==Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation==
-		+	<StructureSection load='7m5s' size='340' side='right'caption='[[7m5s]], [[Resolution\|resolution]] 3.26Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[7m5s]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_alphaherpesvirus_1_strain_KOS Human alphaherpesvirus 1 strain KOS] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7M5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7M5S FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GS:GUANOSINE-5-THIO-MONOPHOSPHATE'>GS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7m5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7m5s OCA], [https://pdbe.org/7m5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7m5s RCSB], [https://www.ebi.ac.uk/pdbsum/7m5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7m5s ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/H9E937_HHV1 H9E937_HHV1] Replicates viral genomic DNA. The replication complex is composed of six viral proteins: the DNA polymerase, processivity factor, primase, primase-associated factor, helicase, and ssDNA-binding protein. Additionally, the polymerase contains an intrinsic ribonuclease H (RNase H) activity that specifically degrades RNA/DNA heteroduplexes or duplex DNA substrates in the 5' to 3' direction. Therefore, it can catalyze the excision of the RNA primers that initiate the synthesis of Okazaki fragments at a replication fork during viral DNA replication.[ARBA:ARBA00025601]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Human alphaherpesvirus 1 strain KOS]]
		+	[[Category: Large Structures]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Abraham J]]
		+	[[Category: Coen DM]]
		+	[[Category: Hogle J]]
		+	[[Category: Pan J]]
		+	[[Category: Shankar S]]
		+	[[Category: Yang P]]

OCA at 07:39, 24 November 2022

OCA — Thu, 24 Nov 2022 07:39:36 GMT

←Older revision		Revision as of 07:39, 24 November 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7m5s is ON HOLD	+	The entry 7m5s is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 04:37, 9 November 2022

OCA — Wed, 09 Nov 2022 04:37:05 GMT

←Older revision		Revision as of 04:37, 9 November 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7m5s is ON HOLD ~~until Paper Publication~~	+	The entry 7m5s is ON HOLD

	Authors:		Authors:

OCA at 06:15, 21 April 2021

OCA — Wed, 21 Apr 2021 06:15:37 GMT

←Older revision		Revision as of 06:15, 21 April 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7m5s is ON HOLD	+	The entry 7m5s is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7m5s" [edit=sysop:move=sysop]

OCA — Wed, 31 Mar 2021 09:24:43 GMT

Protected "7m5s" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:24, 31 March 2021

OCA: New page: '''Unreleased structure''' The entry 7m5s is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 31 Mar 2021 09:24:42 GMT

New page: '''Unreleased structure''' The entry 7m5s is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7m5s is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]