7mot - Revision history

OCA at 10:40, 22 May 2024

OCA — Wed, 22 May 2024 10:40:10 GMT

←Older revision		Revision as of 10:40, 22 May 2024
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	==Structure of HDAC2 in complex with an inhibitor (compound 9)==		==Structure of HDAC2 in complex with an inhibitor (compound 9)==
-	<StructureSection load='7mot' size='340' side='right'caption='[[7mot]]' scene=''>	+	<StructureSection load='7mot' size='340' side='right'caption='[[7mot]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MOT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7mot]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MOT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mot OCA], [https://pdbe.org/7mot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mot RCSB], [https://www.ebi.ac.uk/pdbsum/7mot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mot ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.54Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=V1P:5-{(1S)-7,7-dihydroxy-1-[(1-methylazetidine-3-carbonyl)amino]nonyl}-2-phenyl-1H-imidazole-4-carboxamide'>V1P</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mot OCA], [https://pdbe.org/7mot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mot RCSB], [https://www.ebi.ac.uk/pdbsum/7mot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mot ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/HDAC2_HUMAN HDAC2_HUMAN] Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Forms transcriptional repressor complexes by associating with MAD, SIN3, YY1 and N-COR. Interacts in the late S-phase of DNA-replication with DNMT1 in the other transcriptional repressor complex composed of DNMT1, DMAP1, PCNA, CAF1. Deacetylates TSHZ3 and regulates its transcriptional repressor activity. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development.<ref>PMID:19343227</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A series of unique macrocyclic HDACs 1, 2, and 3 selective inhibitors were identified with good enzymatic activity and high selectivity over HDACs 6 and 8. These macrocyclic HDAC inhibitors used an ethyl ketone as the zinc-binding group. Compounds 25 and 26 stood out as leads due to their low double-digit nM EC50s in the 2C4 cell-based HIV latency reactivation assay. The PK profiles of these macrocyclic HDAC inhibitors still needed improvement.
		+
		+	Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.,Yu W, Fells J, Clausen D, Liu J, Klein DJ, Christine Chung C, Myers RW, Wu J, Wu G, Howell BJ, Barnard RJO, Kozlowski J Bioorg Med Chem Lett. 2021 Jun 4;47:128168. doi: 10.1016/j.bmcl.2021.128168. PMID:34091041<ref>PMID:34091041</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7mot" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Histone deacetylase 3D structures\|Histone deacetylase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Klein DJ]]		[[Category: Klein DJ]]
	[[Category: Yu W]]		[[Category: Yu W]]

OCA at 09:55, 14 July 2021

OCA — Wed, 14 Jul 2021 09:55:23 GMT

←Older revision		Revision as of 09:55, 14 July 2021
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-	'''Unreleased structure'''

-	~~The entry 7mot is ON HOLD until Paper Publication~~	+	==Structure of HDAC2 in complex with an inhibitor (compound 9)==
-		+	<StructureSection load='7mot' size='340' side='right'caption='[[7mot]]' scene=''>
-	~~Authors: Klein, D.J., Yu, W.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7MOT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7MOT FirstGlance]. <br>
-	~~Description:~~ Structure of HDAC2 in complex with an inhibitor (compound 9)	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7mot FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7mot OCA], [https://pdbe.org/7mot PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7mot RCSB], [https://www.ebi.ac.uk/pdbsum/7mot PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7mot ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Klein~~, D.J~~]]	+	__TOC__
-	[[Category: Yu, W]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Klein DJ]]
		+	[[Category: Yu W]]

OCA at 11:04, 9 June 2021

OCA — Wed, 09 Jun 2021 11:04:43 GMT

←Older revision		Revision as of 11:04, 9 June 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7mot is ON HOLD	+	The entry 7mot is ON HOLD until Paper Publication

	Authors: Klein, D.J., Yu, W.		Authors: Klein, D.J., Yu, W.

OCA: Protected "7mot" [edit=sysop:move=sysop]

OCA — Wed, 12 May 2021 08:13:59 GMT

Protected "7mot" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:13, 12 May 2021

OCA: New page: '''Unreleased structure''' The entry 7mot is ON HOLD Authors: Klein, D.J., Yu, W. Description: Structure of HDAC2 in complex with an inhibitor (compound 9) [[Category: Unreleased Struc...

OCA — Wed, 12 May 2021 08:13:58 GMT

New page: '''Unreleased structure''' The entry 7mot is ON HOLD Authors: Klein, D.J., Yu, W. Description: Structure of HDAC2 in complex with an inhibitor (compound 9) [[Category: Unreleased Struc...

New page

'''Unreleased structure'''

The entry 7mot is ON HOLD

Authors: Klein, D.J., Yu, W.

Description: Structure of HDAC2 in complex with an inhibitor (compound 9)
[[Category: Unreleased Structures]]
[[Category: Klein, D.J]]
[[Category: Yu, W]]