7o8b - Revision history

OCA at 12:46, 1 February 2024

OCA — Thu, 01 Feb 2024 12:46:29 GMT

←Older revision		Revision as of 12:46, 1 February 2024
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	<StructureSection load='7o8b' size='340' side='right'caption='[[7o8b]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='7o8b' size='340' side='right'caption='[[7o8b]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7o8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacterium_mycoides_roseum"_grotenfelt_1889 "bacterium mycoides roseum" grotenfelt 1889~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O8B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7o8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_rhodochrous Rhodococcus rhodochrous]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O8B FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=V5B:methyl+sulfate'>V5B</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>dhaA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1829~~ "~~Bacterium mycoides roseum~~" ~~Grotenfelt 1889])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=V5B:methyl+sulfate'>V5B</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o8b OCA], [https://pdbe.org/7o8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o8b RCSB], [https://www.ebi.ac.uk/pdbsum/7o8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o8b ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o8b OCA], [https://pdbe.org/7o8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o8b RCSB], [https://www.ebi.ac.uk/pdbsum/7o8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o8b ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DHAA_RHORH DHAA_RHORH]] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons. Expresses halogenase activity against 1-chloroalkanes of chain length C3 to C10, and also shows a very weak activity with 1,2-dichloroethane.	+	[https://www.uniprot.org/uniprot/DHAA_RHORH DHAA_RHORH] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons. Expresses halogenase activity against 1-chloroalkanes of chain length C3 to C10, and also shows a very weak activity with 1,2-dichloroethane.
		+
		+	==See Also==
		+	*[[Dehalogenase 3D structures\|Dehalogenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacterium mycoides roseum grotenfelt 1889]]
-	[[Category: Haloalkane dehalogenase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Prudnikova, T]]~~	+	[[Category: Rhodococcus rhodochrous]]
-	~~[[Category: Shaposhnikova, A~~]]	+	[[Category: Kuta Smatanova I]]
-	[[Category: Smatanova, I ~~Kuta~~]]	+	[[Category: Prudnikova T]]
-	[[Category: ~~Alpha/beta hydrolase fold~~]]	+	[[Category: Shaposhnikova A]]
-	[[Category: ~~Hydrolase~~]]	+

OCA at 09:39, 15 September 2021

OCA — Wed, 15 Sep 2021 09:39:13 GMT

←Older revision		Revision as of 09:39, 15 September 2021
Line 1:		Line 1:

	==Structure of haloalkane dehalogenase variant DhaA80 from Rhodococcus rhodochrous==		==Structure of haloalkane dehalogenase variant DhaA80 from Rhodococcus rhodochrous==
-	<StructureSection load='7o8b' size='340' side='right'caption='[[7o8b]]' scene=''>	+	<StructureSection load='7o8b' size='340' side='right'caption='[[7o8b]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O8B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7o8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_mycoides_roseum"_grotenfelt_1889 "bacterium mycoides roseum" grotenfelt 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O8B FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o8b OCA], [https://pdbe.org/7o8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o8b RCSB], [https://www.ebi.ac.uk/pdbsum/7o8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o8b ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=V5B:methyl+sulfate'>V5B</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dhaA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1829 "Bacterium mycoides roseum" Grotenfelt 1889])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o8b OCA], [https://pdbe.org/7o8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o8b RCSB], [https://www.ebi.ac.uk/pdbsum/7o8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o8b ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/DHAA_RHORH DHAA_RHORH]] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons. Expresses halogenase activity against 1-chloroalkanes of chain length C3 to C10, and also shows a very weak activity with 1,2-dichloroethane.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacterium mycoides roseum grotenfelt 1889]]
		+	[[Category: Haloalkane dehalogenase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Kuta~~ Smatanova I]]	+	[[Category: Prudnikova, T]]
-	[[Category: ~~Prudnikova T~~]]	+	[[Category: Shaposhnikova, A]]
-	[[Category: ~~Shaposhnikova A~~]]	+	[[Category: Smatanova, I Kuta]]
		+	[[Category: Alpha/beta hydrolase fold]]
		+	[[Category: Hydrolase]]

OCA at 08:59, 8 September 2021

OCA — Wed, 08 Sep 2021 08:59:10 GMT

←Older revision		Revision as of 08:59, 8 September 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7o8b is ~~ON HOLD until Paper Publication~~	+	==Structure of haloalkane dehalogenase variant DhaA80 from Rhodococcus rhodochrous==
-		+	<StructureSection load='7o8b' size='340' side='right'caption='[[7o8b]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7O8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7O8B FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7o8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7o8b OCA], [https://pdbe.org/7o8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7o8b RCSB], [https://www.ebi.ac.uk/pdbsum/7o8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7o8b ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Kuta Smatanova I]]
		+	[[Category: Prudnikova T]]
		+	[[Category: Shaposhnikova A]]

OCA: Protected "7o8b" [edit=sysop:move=sysop]

OCA — Wed, 21 Apr 2021 06:44:09 GMT

Protected "7o8b" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:44, 21 April 2021

OCA: New page: '''Unreleased structure''' The entry 7o8b is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 21 Apr 2021 06:44:07 GMT

New page: '''Unreleased structure''' The entry 7o8b is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7o8b is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]