7ojr - Revision history

OCA at 12:51, 1 February 2024

OCA — Thu, 01 Feb 2024 12:51:17 GMT

←Older revision		Revision as of 12:51, 1 February 2024
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	<StructureSection load='7ojr' size='340' side='right'caption='[[7ojr]], [[Resolution\|resolution]] 3.05Å' scene=''>		<StructureSection load='7ojr' size='340' side='right'caption='[[7ojr]], [[Resolution\|resolution]] 3.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7ojr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OJR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ojr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OJR FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.05Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https://en.wikipedia.org/wiki/Phosphoglucosamine_mutase Phosphoglucosamine mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.10 5.4.2.10]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ojr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ojr OCA], [https://pdbe.org/7ojr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ojr RCSB], [https://www.ebi.ac.uk/pdbsum/7ojr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ojr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ojr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ojr OCA], [https://pdbe.org/7ojr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ojr RCSB], [https://www.ebi.ac.uk/pdbsum/7ojr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ojr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/GLMM_BACSU GLMM_BACSU]] Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (By similarity). Glucosamine-1-phosphate is used for cell wall biosynthesis (Probable).[HAMAP-Rule:MF_01554]<ref>PMID:26240071</ref>	+	[https://www.uniprot.org/uniprot/GLMM_BACSU GLMM_BACSU] Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (By similarity). Glucosamine-1-phosphate is used for cell wall biosynthesis (Probable).[HAMAP-Rule:MF_01554]<ref>PMID:26240071</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus subtilis subsp. subtilis str. 168]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Phosphoglucosamine mutase]]~~	+	[[Category: Freemont P]]
-	[[Category: Freemont, P]]	+	[[Category: Grundling AG]]
-	[[Category: Grundling~~, A G~~]]	+	[[Category: Pathania M]]
-	[[Category: Pathania, M]]	+
-	~~[[Category: C-di-amp]]~~	+
-	~~[[Category: Diadenylate cyclase]]~~	+
-	~~[[Category: Glucosamine-1-phosphate]]~~	+
-	~~[[Category: Glucosamine-6-phosphate]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 14:16, 17 November 2021

OCA — Wed, 17 Nov 2021 14:16:54 GMT

←Older revision		Revision as of 14:16, 17 November 2021
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	==Bacillus subtilis phosphoglucomutase GlmM (phosphate bound)==		==Bacillus subtilis phosphoglucomutase GlmM (phosphate bound)==
-	<StructureSection load='7ojr' size='340' side='right'caption='[[7ojr]]' scene=''>	+	<StructureSection load='7ojr' size='340' side='right'caption='[[7ojr]], [[Resolution\|resolution]] 3.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OJR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7ojr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OJR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ojr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ojr OCA], [https://pdbe.org/7ojr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ojr RCSB], [https://www.ebi.ac.uk/pdbsum/7ojr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ojr ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoglucosamine_mutase Phosphoglucosamine mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.2.10 5.4.2.10] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ojr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ojr OCA], [https://pdbe.org/7ojr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ojr RCSB], [https://www.ebi.ac.uk/pdbsum/7ojr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ojr ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/GLMM_BACSU GLMM_BACSU]] Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (By similarity). Glucosamine-1-phosphate is used for cell wall biosynthesis (Probable).[HAMAP-Rule:MF_01554]<ref>PMID:26240071</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cyclic-di-adenosine monophosphate (c-di-AMP) is an important nucleotide signaling molecule that plays a key role in osmotic regulation in bacteria. c-di-AMP is produced from two molecules of ATP by proteins containing a diadenylate cyclase (DAC) domain. In Bacillus subtilis, the main c-di-AMP cyclase, CdaA, is a membrane-linked cyclase with an N-terminal transmembrane domain followed by the cytoplasmic DAC domain. As both high and low levels of c-di-AMP have a negative impact on bacterial growth, the cellular levels of this signaling nucleotide are tightly regulated. Here we investigated how the activity of the B. subtilis CdaA is regulated by the phosphoglucomutase GlmM, which has been shown to interact with the c-di-AMP cyclase. Using the soluble B. subtilis CdaACD catalytic domain and purified full-length GlmM or the GlmMF369 variant lacking the C-terminal flexible domain 4, we show that the cyclase and phosphoglucomutase form a stable complex in vitro and that GlmM is a potent cyclase inhibitor. We determined the crystal structure of the individual B. subtilis CdaACD and GlmM homodimers and of the CdaACD:GlmMF369 complex. In the complex structure, a CdaACD dimer is bound to a GlmMF369 dimer in such a manner that GlmM blocks the oligomerization of CdaACD and formation of active head-to-head cyclase oligomers, thus suggesting a mechanism by which GlmM acts as a cyclase inhibitor. As the amino acids at the CdaACD:GlmM interphase are conserved, we propose that the observed mechanism of inhibition of CdaA by GlmM may also be conserved among Firmicutes.
		+
		+	Structural basis for the inhibition of the Bacillus subtilis c-di-AMP cyclase CdaA by the phosphoglucomutase GlmM.,Pathania M, Tosi T, Millership C, Hoshiga F, Morgan RML, Freemont PS, Grundling A J Biol Chem. 2021 Oct 20;297(5):101317. doi: 10.1016/j.jbc.2021.101317. PMID:34678313<ref>PMID:34678313</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7ojr" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Freemont P]]	+	[[Category: Phosphoglucosamine mutase]]
-	[[Category: Grundling AG]]	+	[[Category: Freemont, P]]
-	[[Category: Pathania M]]	+	[[Category: Grundling, A G]]
		+	[[Category: Pathania, M]]
		+	[[Category: C-di-amp]]
		+	[[Category: Diadenylate cyclase]]
		+	[[Category: Glucosamine-1-phosphate]]
		+	[[Category: Glucosamine-6-phosphate]]
		+	[[Category: Isomerase]]
		+	[[Category: Transferase]]

OCA at 14:13, 27 October 2021

OCA — Wed, 27 Oct 2021 14:13:10 GMT

←Older revision		Revision as of 14:13, 27 October 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7ojr is ~~ON HOLD until Paper Publication~~	+	==Bacillus subtilis phosphoglucomutase GlmM (phosphate bound)==
-		+	<StructureSection load='7ojr' size='340' side='right'caption='[[7ojr]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OJR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OJR FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ojr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ojr OCA], [https://pdbe.org/7ojr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ojr RCSB], [https://www.ebi.ac.uk/pdbsum/7ojr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ojr ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Freemont P]]
		+	[[Category: Grundling AG]]
		+	[[Category: Pathania M]]

OCA: Protected "7ojr" [edit=sysop:move=sysop]

OCA — Wed, 26 May 2021 08:08:24 GMT

Protected "7ojr" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:08, 26 May 2021

OCA: New page: '''Unreleased structure''' The entry 7ojr is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 26 May 2021 08:08:23 GMT

New page: '''Unreleased structure''' The entry 7ojr is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7ojr is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]