7oy7 - Revision history

OCA at 12:58, 1 February 2024

OCA — Thu, 01 Feb 2024 12:58:32 GMT

←Older revision		Revision as of 12:58, 1 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7oy7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi_GE5 Pyrococcus abyssi GE5] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OY7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OY7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7oy7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi_GE5 Pyrococcus abyssi GE5] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OY7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OY7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PED:PENTANE-3,4-DIOL-5-PHOSPHATE'>PED</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PED:PENTANE-3,4-DIOL-5-PHOSPHATE'>PED</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oy7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oy7 OCA], [https://pdbe.org/7oy7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oy7 RCSB], [https://www.ebi.ac.uk/pdbsum/7oy7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oy7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oy7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oy7 OCA], [https://pdbe.org/7oy7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oy7 RCSB], [https://www.ebi.ac.uk/pdbsum/7oy7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oy7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/AGOG_PYRAB AGOG_PYRAB] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates.		[https://www.uniprot.org/uniprot/AGOG_PYRAB AGOG_PYRAB] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates.
		+
		+	==See Also==
		+	*[[DNA glycosylase 3D structures\|DNA glycosylase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:45, 11 January 2023

OCA — Wed, 11 Jan 2023 07:45:34 GMT

←Older revision		Revision as of 07:45, 11 January 2023
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	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/AGOG_PYRAB AGOG_PYRAB]] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates.	+	[https://www.uniprot.org/uniprot/AGOG_PYRAB AGOG_PYRAB] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 05:42, 8 September 2022

OCA — Thu, 08 Sep 2022 05:42:36 GMT

←Older revision		Revision as of 05:42, 8 September 2022
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-	====	+	==Crystal structure of a trapped Pab-AGOG/double-standed DNA covalent intermediate (DNA containing cytosine opposite to lesion)==
-	<StructureSection load='7oy7' size='340' side='right'caption='[[7oy7]]' scene=''>	+	<StructureSection load='7oy7' size='340' side='right'caption='[[7oy7]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7oy7]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_abyssi_GE5 Pyrococcus abyssi GE5] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7OY7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7OY7 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oy7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oy7 OCA], [https://pdbe.org/7oy7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oy7 RCSB], [https://www.ebi.ac.uk/pdbsum/7oy7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oy7 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PED:PENTANE-3,4-DIOL-5-PHOSPHATE'>PED</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oy7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oy7 OCA], [https://pdbe.org/7oy7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oy7 RCSB], [https://www.ebi.ac.uk/pdbsum/7oy7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oy7 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/AGOG_PYRAB AGOG_PYRAB]] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Pyrococcus abyssi GE5]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Castaing B]]
		+	[[Category: Coste F]]
		+	[[Category: Flament D]]
		+	[[Category: Goffinont S]]

OCA at 05:14, 13 July 2022

OCA — Wed, 13 Jul 2022 05:14:01 GMT

←Older revision		Revision as of 05:14, 13 July 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7oy7 ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7oy7' size='340' side='right'caption='[[7oy7]]' scene=''>
-	~~Authors~~: ~~Coste, F~~.~~, Goffinont, S~~.~~, Flament, D~~.~~, Castaing, B~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description: Crystal~~ structure ~~of a trapped Pab-AGOG~~/~~double-standed DNA covalent intermediate (DNA containing cytosine opposite to lesion)~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7oy7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7oy7 OCA], [https://pdbe.org/7oy7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7oy7 RCSB], [https://www.ebi.ac.uk/pdbsum/7oy7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7oy7 ProSAT]</span></td></tr>
-	[~~[Category~~: ~~Unreleased Structures]~~]	+	</table>
-	[[~~Category~~: ~~Castaing~~, B]]	+	__TOC__
-	[~~[Category~~: ~~Coste~~, F]]	+	</StructureSection>
-	[[Category: ~~Flament, D~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Goffinont, S~~]]	+	[[Category: Z-disk]]

OCA at 08:51, 7 July 2021

OCA — Wed, 07 Jul 2021 08:51:37 GMT

←Older revision		Revision as of 08:51, 7 July 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7oy7 is ON HOLD	+	The entry 7oy7 is ON HOLD until Paper Publication

	Authors: Coste, F., Goffinont, S., Flament, D., Castaing, B.		Authors: Coste, F., Goffinont, S., Flament, D., Castaing, B.

OCA: Protected "7oy7" [edit=sysop:move=sysop]

OCA — Fri, 02 Jul 2021 02:36:53 GMT

Protected "7oy7" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:36, 2 July 2021

OCA: New page: '''Unreleased structure''' The entry 7oy7 is ON HOLD Authors: Coste, F., Goffinont, S., Flament, D., Castaing, B. Description: Crystal structure of a trapped Pab-AGOG/double-standed DN...

OCA — Fri, 02 Jul 2021 02:36:52 GMT

New page: '''Unreleased structure''' The entry 7oy7 is ON HOLD Authors: Coste, F., Goffinont, S., Flament, D., Castaing, B. Description: Crystal structure of a trapped Pab-AGOG/double-standed DN...

New page

'''Unreleased structure'''

The entry 7oy7 is ON HOLD

Authors: Coste, F., Goffinont, S., Flament, D., Castaing, B.

Description: Crystal structure of a trapped Pab-AGOG/double-standed DNA covalent intermediate (DNA containing cytosine opposite to lesion)
[[Category: Unreleased Structures]]
[[Category: Castaing, B]]
[[Category: Coste, F]]
[[Category: Flament, D]]
[[Category: Goffinont, S]]