OCA at 13:02, 1 February 2024

OCA — Thu, 01 Feb 2024 13:02:36 GMT

←Older revision		Revision as of 13:02, 1 February 2024
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	==Crystal Structure of leukotoxin LukE from Staphylococcus aureus in complex with p-cresyl sulfate==		==Crystal Structure of leukotoxin LukE from Staphylococcus aureus in complex with p-cresyl sulfate==
-	<StructureSection load='7p8u' size='340' side='right'caption='[[7p8u]]' scene=''>	+	<StructureSection load='7p8u' size='340' side='right'caption='[[7p8u]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P8U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7p8u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P8U FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p8u OCA], [https://pdbe.org/7p8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p8u RCSB], [https://www.ebi.ac.uk/pdbsum/7p8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p8u ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6EI:(4-methylphenyl)+hydrogen+sulfate'>6EI</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p8u OCA], [https://pdbe.org/7p8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p8u RCSB], [https://www.ebi.ac.uk/pdbsum/7p8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p8u ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/LUKEV_STAA8 LUKEV_STAA8] Part of a bi-component leucotoxin that acts by forming pores in the membrane of the target cells. The activity of LukEv-LukDv to rabbit leukocytes is similar to that of the Panton-Valentine leucocidin (PVL). LukEv-LukDv is hemolytic to rabbit red blood cells although the activity is only 8% of gamma-hemolysin.<ref>PMID:12636257</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Staphylococcus aureus (SA) leukocidin LukED belongs to a family of bicomponent pore forming toxins that play important roles in SA immune evasion and nutrient acquisition. LukED targets specific G protein-coupled chemokine receptors to lyse human erythrocytes (red blood cells) and leukocytes (white blood cells). The first recognition step of receptors is critical for specific cell targeting and lysis. The structural and molecular bases for this mechanism are not well understood but could constitute essential information to guide antibiotic development. Here, we characterized the interaction of LukE with chemokine receptors ACKR1, CCR2 and CCR5 using a combination of structural, pharmacological and computational approaches. First, crystal structures of LukE in complex with a small molecule mimicking sulfotyrosine side chain (p-cresyl sulfate) and with peptides containing sulfotyrosines issued from receptor sequences revealed the location of receptor sulfotyrosine binding sites in the toxins. Then, by combining previous and novel experimental data with protein docking, classical and accelerated weight histogram (AWH) molecular dynamics we propose models of the ACKR1-LukE and CCR5-LukE complexes. This work provides novel insights into chemokine receptor recognition by leukotoxins and suggests that the conserved sulfotyrosine binding pocket could be a target of choice for future drug development.
		+
		+	Structural insights into recognition of chemokine receptors by Staphylococcus aureus leukotoxins.,Lambey P, Otun O, Cong X, Hoh F, Brunel L, Verdie P, Grison CM, Peysson F, Jeannot S, Durroux T, Bechara C, Granier S, Leyrat C Elife. 2022 Mar 21;11. pii: 72555. doi: 10.7554/eLife.72555. PMID:35311641<ref>PMID:35311641</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7p8u" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Staphylococcus aureus]]
	[[Category: Granier S]]		[[Category: Granier S]]
	[[Category: Hoh F]]		[[Category: Hoh F]]

OCA at 10:24, 6 April 2022

OCA — Wed, 06 Apr 2022 10:24:20 GMT

←Older revision		Revision as of 10:24, 6 April 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7p8u is ~~ON HOLD until Paper Publication~~	+	==Crystal Structure of leukotoxin LukE from Staphylococcus aureus in complex with p-cresyl sulfate==
-		+	<StructureSection load='7p8u' size='340' side='right'caption='[[7p8u]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7P8U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7P8U FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7p8u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7p8u OCA], [https://pdbe.org/7p8u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7p8u RCSB], [https://www.ebi.ac.uk/pdbsum/7p8u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7p8u ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Granier S]]
		+	[[Category: Hoh F]]
		+	[[Category: Lambey P]]
		+	[[Category: Leyrat C]]
		+	[[Category: Peysson F]]

OCA at 05:09, 25 August 2021

OCA — Wed, 25 Aug 2021 05:09:15 GMT

←Older revision		Revision as of 05:09, 25 August 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7p8u is ON HOLD	+	The entry 7p8u is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7p8u" [edit=sysop:move=sysop]

OCA — Wed, 04 Aug 2021 09:14:14 GMT

Protected "7p8u" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:14, 4 August 2021

OCA: New page: '''Unreleased structure''' The entry 7p8u is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 04 Aug 2021 09:14:13 GMT

New page: '''Unreleased structure''' The entry 7p8u is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7p8u is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7p8u - Revision history

OCA at 13:02, 1 February 2024

OCA at 10:24, 6 April 2022

OCA at 05:09, 25 August 2021

OCA: Protected "7p8u" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7p8u is ON HOLD Authors: Description: Category: Unreleased Structures