OCA at 11:01, 30 November 2022

OCA — Wed, 30 Nov 2022 11:01:30 GMT

←Older revision		Revision as of 11:01, 30 November 2022
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	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/A0A2U2MES7_STRTR A0A2U2MES7_STRTR]] The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.[HAMAP-Rule:MF_00016]	+	[https://www.uniprot.org/uniprot/A0A2U2MES7_STRTR A0A2U2MES7_STRTR] The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.[HAMAP-Rule:MF_00016]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 06:53, 14 September 2022

OCA — Wed, 14 Sep 2022 06:53:00 GMT

←Older revision		Revision as of 06:53, 14 September 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7pbt is ~~ON HOLD until Paper~~ Publication	+	==RuvAB branch migration motor complexed to the Holliday junction - RuvB AAA+ state s1 [t1 dataset]==
		+	<StructureSection load='7pbt' size='340' side='right'caption='[[7pbt]], [[Resolution\|resolution]] 3.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7pbt]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium], [https://en.wikipedia.org/wiki/Streptococcus_thermophilus Streptococcus thermophilus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PBT FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AGS:PHOSPHOTHIOPHOSPHORIC+ACID-ADENYLATE+ESTER'>AGS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pbt OCA], [https://pdbe.org/7pbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pbt RCSB], [https://www.ebi.ac.uk/pdbsum/7pbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pbt ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/A0A2U2MES7_STRTR A0A2U2MES7_STRTR]] The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.[HAMAP-Rule:MF_00016]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Holliday junction is a key intermediate formed during DNA recombination across all kingdoms of life(1). In bacteria, the Holliday junction is processed by two homo-hexameric AAA+ ATPase RuvB motors, which assemble together with the RuvA-Holliday junction complex to energize the strand-exchange reaction(2). Despite its importance for chromosome maintenance, the structure and mechanism by which this complex facilitates branch migration are unknown. Here, using time-resolved cryo-electron microscopy, we obtained structures of the ATP-hydrolysing RuvAB complex in seven distinct conformational states, captured during assembly and processing of a Holliday junction. Five structures together resolve the complete nucleotide cycle and reveal the spatiotemporal relationship between ATP hydrolysis, nucleotide exchange and context-specific conformational changes in RuvB. Coordinated motions in a converter formed by DNA-disengaged RuvB subunits stimulate hydrolysis and nucleotide exchange. Immobilization of the converter enables RuvB to convert the ATP-contained energy into a lever motion, which generates the pulling force driving the branch migration. We show that RuvB motors rotate together with the DNA substrate, which, together with a progressing nucleotide cycle, forms the mechanistic basis for DNA recombination by continuous branch migration. Together, our data decipher the molecular principles of homologous recombination by the RuvAB complex, elucidate discrete and sequential transition-state intermediates for chemo-mechanical coupling of hexameric AAA+ motors and provide a blueprint for the design of state-specific compounds targeting AAA+ motors.

-	~~Authors~~:	+	Mechanism of AAA+ ATPase-mediated RuvAB-Holliday junction branch migration.,Wald J, Fahrenkamp D, Goessweiner-Mohr N, Lugmayr W, Ciccarelli L, Vesper O, Marlovits TC Nature. 2022 Aug 24. pii: 10.1038/s41586-022-05121-1. doi:, 10.1038/s41586-022-05121-1. PMID:36002576<ref>PMID:36002576</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7pbt" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
		+	[[Category: Streptococcus thermophilus]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Fahrenkamp D]]
		+	[[Category: Goessweiner-Mohr N]]
		+	[[Category: Marlovits TC]]
		+	[[Category: Wald J]]

OCA at 07:28, 8 September 2021

OCA — Wed, 08 Sep 2021 07:28:43 GMT

←Older revision		Revision as of 07:28, 8 September 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7pbt is ON HOLD	+	The entry 7pbt is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7pbt" [edit=sysop:move=sysop]

OCA — Wed, 11 Aug 2021 05:05:15 GMT

Protected "7pbt" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:05, 11 August 2021

OCA: New page: '''Unreleased structure''' The entry 7pbt is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 11 Aug 2021 05:05:14 GMT

New page: '''Unreleased structure''' The entry 7pbt is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7pbt is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

7pbt - Revision history

OCA at 11:01, 30 November 2022

OCA at 06:53, 14 September 2022

OCA at 07:28, 8 September 2021

OCA: Protected "7pbt" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7pbt is ON HOLD Authors: Description: Category: Unreleased Structures