OCA at 07:44, 9 November 2022

OCA — Wed, 09 Nov 2022 07:44:04 GMT

←Older revision		Revision as of 07:44, 9 November 2022
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-	====	+	==Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment==
-	<StructureSection load='7pnq' size='340' side='right'caption='[[7pnq]]' scene=''>	+	<StructureSection load='7pnq' size='340' side='right'caption='[[7pnq]], [[Resolution\|resolution]] 3.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7pnq]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_coronavirus_OC43 Human coronavirus OC43]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PNQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PNQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pnq OCA], [https://pdbe.org/7pnq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pnq RCSB], [https://www.ebi.ac.uk/pdbsum/7pnq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pnq ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pnq OCA], [https://pdbe.org/7pnq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pnq RCSB], [https://www.ebi.ac.uk/pdbsum/7pnq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pnq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SPIKE_CVHOC SPIKE_CVHOC] S1 attaches the virion to the cell membrane by interacting with sialic acid-containing cell receptors, initiating the infection. Attaches the virion to the cell membrane by interacting with host receptor, initiating the infection.[HAMAP-Rule:MF_04099] Mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Human coronavirus OC43 is a globally circulating common cold virus sustained by recurrent reinfections. How it persists in the population and defies existing herd immunity is unknown. Here we focus on viral glycoprotein S, the target for neutralizing antibodies, and provide an in-depth analysis of its antigenic structure. Neutralizing antibodies are directed to the sialoglycan-receptor binding site in S1A domain, but, remarkably, also to S1B. The latter block infection yet do not prevent sialoglycan binding. While two distinct neutralizing S1B epitopes are readily accessible in the prefusion S trimer, other sites are occluded such that their accessibility must be subject to conformational changes in S during cell-entry. While non-neutralizing antibodies were broadly reactive against a collection of natural OC43 variants, neutralizing antibodies generally displayed restricted binding breadth. Our data provide a structure-based understanding of protective immunity and adaptive evolution for this endemic coronavirus which emerged in humans long before SARS-CoV-2.
		+
		+	Antigenic structure of the human coronavirus OC43 spike reveals exposed and occluded neutralizing epitopes.,Wang C, Hesketh EL, Shamorkina TM, Li W, Franken PJ, Drabek D, van Haperen R, Townend S, van Kuppeveld FJM, Grosveld F, Ranson NA, Snijder J, de Groot RJ, Hurdiss DL, Bosch BJ Nat Commun. 2022 May 25;13(1):2921. doi: 10.1038/s41467-022-30658-0. PMID:35614127<ref>PMID:35614127</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7pnq" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Antibody 3D structures\|Antibody 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Human coronavirus OC43]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Hurdiss DL]]

OCA at 02:54, 21 April 2022

OCA — Thu, 21 Apr 2022 02:54:54 GMT

←Older revision		Revision as of 02:54, 21 April 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7pnq ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='7pnq' size='340' side='right'caption='[[7pnq]]' scene=''>
-	~~Authors~~: ~~Hurdiss~~, D.L.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description: Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pnq OCA], [https://pdbe.org/7pnq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pnq RCSB], [https://www.ebi.ac.uk/pdbsum/7pnq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pnq ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Hurdiss, D.L~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 04:05, 6 October 2021

OCA — Wed, 06 Oct 2021 04:05:16 GMT

←Older revision		Revision as of 04:05, 6 October 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7pnq is ON HOLD	+	The entry 7pnq is ON HOLD until Paper Publication

	Authors: Hurdiss, D.L.		Authors: Hurdiss, D.L.

OCA: Protected "7pnq" [edit=sysop:move=sysop]

OCA — Wed, 15 Sep 2021 08:12:24 GMT

Protected "7pnq" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:12, 15 September 2021

OCA: New page: '''Unreleased structure''' The entry 7pnq is ON HOLD Authors: Hurdiss, D.L. Description: Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab frag...

OCA — Wed, 15 Sep 2021 08:12:23 GMT

New page: '''Unreleased structure''' The entry 7pnq is ON HOLD Authors: Hurdiss, D.L. Description: Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab frag...

New page

'''Unreleased structure'''

The entry 7pnq is ON HOLD

Authors: Hurdiss, D.L.

Description: Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab fragment
[[Category: Unreleased Structures]]
[[Category: Hurdiss, D.L]]

7pnq - Revision history

OCA at 07:44, 9 November 2022

OCA at 02:54, 21 April 2022

OCA at 04:05, 6 October 2021

OCA: Protected "7pnq" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7pnq is ON HOLD Authors: Hurdiss, D.L. Description: Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 43E6 antibody Fab frag...