7pr3 - Revision history

OCA at 13:08, 1 February 2024

OCA — Thu, 01 Feb 2024 13:08:00 GMT

←Older revision		Revision as of 13:08, 1 February 2024
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	<StructureSection load='7pr3' size='340' side='right'caption='[[7pr3]], [[Resolution\|resolution]] 2.37Å' scene=''>		<StructureSection load='7pr3' size='340' side='right'caption='[[7pr3]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7pr3]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PR3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7pr3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PR3 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=80M:sulfonato-thiacalix[4]arene'>80M</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.37Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7pr2\|7pr2]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=80M:sulfonato-thiacalix[4]arene'>80M</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pr3 OCA], [https://pdbe.org/7pr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pr3 RCSB], [https://www.ebi.ac.uk/pdbsum/7pr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pr3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pr3 OCA], [https://pdbe.org/7pr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pr3 RCSB], [https://www.ebi.ac.uk/pdbsum/7pr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pr3 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	+	[https://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 7pr3" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 7pr3" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Crowley, P B~~]]	+	[[Category: Saccharomyces cerevisiae S288C]]
-	[[Category: ~~Flood, R J~~]]	+	[[Category: Crowley PB]]
-	[[Category: ~~Guagnini, F~~]]	+	[[Category: Flood RJ]]
-	[[Category: ~~Ramberg, K~~]]	+	[[Category: Guagnini F]]
-	[[Category: ~~Alpha helix]]~~	+	[[Category: Ramberg K]]
-	~~[[Category: Calixarene]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Metal cluster]]~~	+
-	~~[[Category: Molecular glue]]~~	+
-	~~[[Category: Synthetic receptor]]~~	+
-	~~[[Category: Thiacalixarene~~]]	+

OCA at 10:23, 18 May 2022

OCA — Wed, 18 May 2022 10:23:38 GMT

←Older revision		Revision as of 10:23, 18 May 2022
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	==Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene - zinc cluster==		==Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene - zinc cluster==
-	<StructureSection load='7pr3' size='340' side='right'caption='[[7pr3]]' scene=''>	+	<StructureSection load='7pr3' size='340' side='right'caption='[[7pr3]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PR3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7pr3]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PR3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pr3 OCA], [https://pdbe.org/7pr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pr3 RCSB], [https://www.ebi.ac.uk/pdbsum/7pr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pr3 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=80M:sulfonato-thiacalix[4]arene'>80M</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7pr2\|7pr2]]</div></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pr3 OCA], [https://pdbe.org/7pr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pr3 RCSB], [https://www.ebi.ac.uk/pdbsum/7pr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pr3 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Controlled protein assembly provides a means to generate biomaterials. Synthetic macrocycles such as the water-soluble sulfonato-calix[n]arenes are useful mediators of protein assembly. Sulfonato-thiacalix[4]arene (tsclx 4 ), with its metal-binding capacity, affords the potential for simultaneous macrocycle- and metal-mediated protein assembly. Here, we describe the tsclx 4 -/Zn-directed assembly of two proteins: cationic alpha-helical cytochrome c (cyt c) and neutral beta-propeller Ralstonia solanacearum lectin (RSL). Two co-crystal forms were obtained with cyt c, each involving multinuclear zinc sites supported by the cone conformation of tsclx 4 . The tsclx 4 /Zn cluster acted as an assembly node via both lysine encapsulation and metal-mediated protein-protein contacts. In the case of RSL, tsclx 4 adopted the 1,2-alternate conformation and supported a dinuclear zinc site with concomitant encapsulation and metal-binding of two histidine side chains. These results, together with the knowledge of thiacalixarene/metal nanoclusters, suggest promising applications for thiacalixarenes in biomaterials and MOF fabrication.
		+
		+	Protein Frameworks with Thiacalixarene and Zinc.,Flood RJ, Ramberg KO, Mengel DB, Guagnini F, Crowley PB Cryst Growth Des. 2022 May 4;22(5):3271-3276. doi: 10.1021/acs.cgd.2c00108. Epub , 2022 Feb 22. PMID:35529063<ref>PMID:35529063</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7pr3" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Crowley PB]]	+	[[Category: Crowley, P B]]
-	[[Category: Flood RJ]]	+	[[Category: Flood, R J]]
-	[[Category: Guagnini F]]	+	[[Category: Guagnini, F]]
-	[[Category: Ramberg K]]	+	[[Category: Ramberg, K]]
		+	[[Category: Alpha helix]]
		+	[[Category: Calixarene]]
		+	[[Category: Electron transport]]
		+	[[Category: Metal cluster]]
		+	[[Category: Molecular glue]]
		+	[[Category: Synthetic receptor]]
		+	[[Category: Thiacalixarene]]

OCA at 06:19, 2 March 2022

OCA — Wed, 02 Mar 2022 06:19:57 GMT

←Older revision		Revision as of 06:19, 2 March 2022
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-	'''Unreleased structure'''

-	~~The entry 7pr3 is ON HOLD until Paper Publication~~	+	==Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene - zinc cluster==
-		+	<StructureSection load='7pr3' size='340' side='right'caption='[[7pr3]]' scene=''>
-	~~Authors: Flood, R.J., Ramberg, K., Guagnini, F., Crowley, P.B.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PR3 FirstGlance]. <br>
-	~~Description:~~ Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene -zinc cluster	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pr3 OCA], [https://pdbe.org/7pr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pr3 RCSB], [https://www.ebi.ac.uk/pdbsum/7pr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pr3 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Crowley~~, P.B~~]]	+	__TOC__
-	[[Category: ~~Guagnini, F~~]]	+	</StructureSection>
-	[[Category: ~~Ramberg, K~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Flood, R.J~~]]	+	[[Category: Crowley PB]]
		+	[[Category: Flood RJ]]
		+	[[Category: Guagnini F]]
		+	[[Category: Ramberg K]]

OCA at 14:53, 20 October 2021

OCA — Wed, 20 Oct 2021 14:53:27 GMT

←Older revision		Revision as of 14:53, 20 October 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7pr3 is ON HOLD	+	The entry 7pr3 is ON HOLD until Paper Publication

	Authors: Flood, R.J., Ramberg, K., Guagnini, F., Crowley, P.B.		Authors: Flood, R.J., Ramberg, K., Guagnini, F., Crowley, P.B.
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	Description: Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene -zinc cluster		Description: Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene -zinc cluster
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Ramberg, K]]
	[[Category: Crowley, P.B]]		[[Category: Crowley, P.B]]
-	[[Category: Flood, R.J]]
	[[Category: Guagnini, F]]		[[Category: Guagnini, F]]
		+	[[Category: Ramberg, K]]
		+	[[Category: Flood, R.J]]

OCA: Protected "7pr3" [edit=sysop:move=sysop]

OCA — Wed, 29 Sep 2021 07:39:09 GMT

Protected "7pr3" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:39, 29 September 2021

OCA: New page: '''Unreleased structure''' The entry 7pr3 is ON HOLD Authors: Flood, R.J., Ramberg, K., Guagnini, F., Crowley, P.B. Description: Cocrystal Form I of a cytochrome c, sulfonato-thiacalix...

OCA — Wed, 29 Sep 2021 07:39:08 GMT

New page: '''Unreleased structure''' The entry 7pr3 is ON HOLD Authors: Flood, R.J., Ramberg, K., Guagnini, F., Crowley, P.B. Description: Cocrystal Form I of a cytochrome c, sulfonato-thiacalix...

New page

'''Unreleased structure'''

The entry 7pr3 is ON HOLD

Authors: Flood, R.J., Ramberg, K., Guagnini, F., Crowley, P.B.

Description: Cocrystal Form I of a cytochrome c, sulfonato-thiacalix[4]arene -zinc cluster
[[Category: Unreleased Structures]]
[[Category: Ramberg, K]]
[[Category: Crowley, P.B]]
[[Category: Flood, R.J]]
[[Category: Guagnini, F]]