OCA at 16:41, 18 October 2023

OCA — Wed, 18 Oct 2023 16:41:22 GMT

←Older revision		Revision as of 16:41, 18 October 2023
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-	====	+	==Structures of TcdB in complex with R-Ras==
-	<StructureSection load='7s0z' size='340' side='right'caption='[[7s0z]]' scene=''>	+	<StructureSection load='7s0z' size='340' side='right'caption='[[7s0z]], [[Resolution\|resolution]] 2.34Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7s0z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile Clostridioides difficile] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7S0Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7S0Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s0z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s0z OCA], [https://pdbe.org/7s0z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s0z RCSB], [https://www.ebi.ac.uk/pdbsum/7s0z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s0z ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.34Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s0z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s0z OCA], [https://pdbe.org/7s0z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s0z RCSB], [https://www.ebi.ac.uk/pdbsum/7s0z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s0z ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TCDB2_CLODI TCDB2_CLODI]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Toxin B (TcdB) is a primary cause of Clostridioides difficile infection (CDI). This toxin acts by glucosylating small GTPases in the Rho/Ras families, but the structural basis for TcdB recognition and selectivity of specific GTPase substrates remain unsolved. Here, we report the cocrystal structures of the glucosyltransferase domain (GTD) of two distinct TcdB variants in complex with human Cdc42 and R-Ras, respectively. These structures reveal a common structural mechanism by which TcdB recognizes Rho and R-Ras. Furthermore, we find selective clustering of adaptive residue changes in GTDs that determine their substrate preferences, which helps partition all known TcdB variants into two groups that display distinct specificities toward Rho or R-Ras. Mutations that selectively disrupt GTPases binding reduce the glucosyltransferase activity of the GTD and the toxicity of TcdB holotoxin. These findings establish the structural basis for TcdB recognition of small GTPases and reveal strategies for therapeutic interventions for CDI.
		+
		+	Structural basis for selective modification of Rho and Ras GTPases by Clostridioides difficile toxin B.,Liu Z, Zhang S, Chen P, Tian S, Zeng J, Perry K, Dong M, Jin R Sci Adv. 2021 Oct 22;7(43):eabi4582. doi: 10.1126/sciadv.abi4582. Epub 2021 Oct , 22. PMID:34678063<ref>PMID:34678063</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7s0z" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Clostridioides difficile]]
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Peng C]]
		+	[[Category: Rongsheng J]]
		+	[[Category: Zheng L]]

OCA: Protected "7s0z" [edit=sysop:move=sysop]

OCA — Wed, 08 Sep 2021 09:00:41 GMT

Protected "7s0z" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:00, 8 September 2021

OCA: New page: ==== == Structural highlights ==
Full crystallographic information is availabl...
OCA — Wed, 08 Sep 2021 09:00:39 GMT

New page: ==== <StructureSection load='7s0z' size='340' side='right'caption='7s0z' scene=''> == Structural highlights == <table><tr><td colspan='2'>Full crystallographic information is availabl...

New page

====
<StructureSection load='7s0z' size='340' side='right'caption='[[7s0z]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7s0z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7s0z OCA], [https://pdbe.org/7s0z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7s0z RCSB], [https://www.ebi.ac.uk/pdbsum/7s0z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7s0z ProSAT]</span></td></tr>
</table>
TOC
</StructureSection>
[[Category: Large Structures]]
[[Category: Z-disk]]

7s0z - Revision history

OCA at 16:41, 18 October 2023

OCA: Protected "7s0z" [edit=sysop:move=sysop]