7swa - Revision history

OCA at 16:55, 18 October 2023

OCA — Wed, 18 Oct 2023 16:55:51 GMT

←Older revision		Revision as of 16:55, 18 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7swa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7SWA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7SWA FirstGlance]. <br>		<table><tr><td colspan='2'>[[7swa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7SWA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7SWA FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7swa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7swa OCA], [https://pdbe.org/7swa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7swa RCSB], [https://www.ebi.ac.uk/pdbsum/7swa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7swa ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution\|Resolution]] 2.1Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7swa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7swa OCA], [https://pdbe.org/7swa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7swa RCSB], [https://www.ebi.ac.uk/pdbsum/7swa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7swa ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ]] Hydrolyzes keratin at aromatic and hydrophobic residues.	+	[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ] Hydrolyzes keratin at aromatic and hydrophobic residues.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 7swa" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 7swa" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Proteinase 3D structures\|Proteinase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:40, 7 September 2022

OCA — Wed, 07 Sep 2022 18:40:14 GMT

←Older revision		Revision as of 18:40, 7 September 2022
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	== Function ==		== Function ==
	[[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ]] Hydrolyzes keratin at aromatic and hydrophobic residues.		[[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ]] Hydrolyzes keratin at aromatic and hydrophobic residues.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The relationship between sample thickness and quality of data obtained is investigated by microcrystal electron diffraction (MicroED). Several electron microscopy (EM) grids containing proteinase K microcrystals of similar sizes from the same crystallization batch were prepared. Each grid was transferred into a focused ion beam and a scanning electron microscope in which the crystals were then systematically thinned into lamellae between 95- and 1,650-nm thick. MicroED data were collected at either 120-, 200-, or 300-kV accelerating voltages. Lamellae thicknesses were expressed in multiples of the corresponding inelastic mean free path to allow the results from different acceleration voltages to be compared. The quality of the data and subsequently determined structures were assessed using standard crystallographic measures. Structures were reliably determined with similar quality from crystalline lamellae up to twice the inelastic mean free path. Lower resolution diffraction was observed at three times the mean free path for all three accelerating voltages, but the data quality was insufficient to yield structures. Finally, no coherent diffraction was observed from lamellae thicker than four times the calculated inelastic mean free path. This study benchmarks the ideal specimen thickness with implications for all cryo-EM methods.
		+
		+	Benchmarking the ideal sample thickness in cryo-EM.,Martynowycz MW, Clabbers MTB, Unge J, Hattne J, Gonen T Proc Natl Acad Sci U S A. 2021 Dec 7;118(49). pii: 2108884118. doi:, 10.1073/pnas.2108884118. PMID:34873060<ref>PMID:34873060</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7swa" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:37, 7 September 2022

OCA — Wed, 07 Sep 2022 16:37:03 GMT

←Older revision		Revision as of 16:37, 7 September 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7swa ~~is ON HOLD until Paper Publication~~	+	==MicroED structure of proteinase K from a 320 nm thick lamella measured at 300 kV==
-		+	<StructureSection load='7swa' size='340' side='right'caption='[[7swa]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[7swa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7SWA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7SWA FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7swa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7swa OCA], [https://pdbe.org/7swa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7swa RCSB], [https://www.ebi.ac.uk/pdbsum/7swa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7swa ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ]] Hydrolyzes keratin at aromatic and hydrophobic residues.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Parengyodontium album]]
		+	[[Category: Clabbers MTB]]
		+	[[Category: Gonen T]]
		+	[[Category: Hattne J]]
		+	[[Category: Martynowycz MW]]
		+	[[Category: Unge J]]

OCA at 05:54, 19 January 2022

OCA — Wed, 19 Jan 2022 05:54:24 GMT

←Older revision		Revision as of 05:54, 19 January 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7swa is ON HOLD	+	The entry 7swa is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7swa" [edit=sysop:move=sysop]

OCA — Wed, 01 Dec 2021 05:12:13 GMT

Protected "7swa" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:12, 1 December 2021

OCA: New page: '''Unreleased structure''' The entry 7swa is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 01 Dec 2021 05:12:12 GMT

New page: '''Unreleased structure''' The entry 7swa is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7swa is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]