7t2k - Revision history

OCA at 09:42, 25 October 2023

OCA — Wed, 25 Oct 2023 09:42:23 GMT

←Older revision		Revision as of 09:42, 25 October 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7t2k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T2K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T2K FirstGlance]. <br>		<table><tr><td colspan='2'>[[7t2k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T2K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T2K FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ED0:4-[2-(trifluoromethyl)anilino]-1,3-dihydro-2H-isoindole-2-carbonitrile'>ED0</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.34Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ED0:4-[2-(trifluoromethyl)anilino]-1,3-dihydro-2H-isoindole-2-carbonitrile'>ED0</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t2k OCA], [https://pdbe.org/7t2k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t2k RCSB], [https://www.ebi.ac.uk/pdbsum/7t2k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t2k ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t2k OCA], [https://pdbe.org/7t2k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t2k RCSB], [https://www.ebi.ac.uk/pdbsum/7t2k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t2k ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:10, 14 June 2023

OCA — Wed, 14 Jun 2023 08:10:08 GMT

←Older revision		Revision as of 08:10, 14 June 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7t2k is ~~ON HOLD until Paper~~ Publication	+	==Crystal Structure of TEAD2 in a covalent complex with TED-661==
		+	<StructureSection load='7t2k' size='340' side='right'caption='[[7t2k]], [[Resolution\|resolution]] 2.34Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7t2k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T2K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T2K FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ED0:4-[2-(trifluoromethyl)anilino]-1,3-dihydro-2H-isoindole-2-carbonitrile'>ED0</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t2k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t2k OCA], [https://pdbe.org/7t2k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t2k RCSB], [https://www.ebi.ac.uk/pdbsum/7t2k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t2k ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TEAD2_HUMAN TEAD2_HUMAN] Transcription factor which plays a key role in the Hippo signaling pathway, a pathway involved in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein MST1/MST2, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Acts by mediating gene expression of YAP1 and WWTR1/TAZ, thereby regulating cell proliferation, migration and epithelial mesenchymal transition (EMT) induction. Binds to the SPH and GT-IIC 'enhansons' (5'-GTGGAATGT-3'). May be involved in the gene regulation of neural development. Binds to the M-CAT motif.<ref>PMID:18579750</ref> <ref>PMID:19324877</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Transcriptional enhanced associate domains (TEADs) are transcription factors that bind to cotranscriptional activators like the yes-associated protein (YAP) or its paralog transcriptional coactivator with a PDZ-binding motif (TAZ). TEAD.YAP/TAZ target genes are involved in tissue and immune homeostasis, organ size control, tumor growth, and metastasis. Here, we report isoindoline and octahydroisoindole small molecules with a cyanamide electrophile that forms a covalent bond with a conserved cysteine in the TEAD palmitate-binding cavity. Time- and concentration-dependent studies against TEAD1-4 yielded second-order rate constants k(inact)/K(I) greater than 100 M(-1) s(-1). Compounds inhibited YAP1 binding to TEADs with submicromolar IC(50) values. Cocrystal structures with TEAD2 enabled structure-activity relationship studies. In mammalian cells, compounds suppressed CTGF mRNA levels and inhibited TEAD1-4 transcriptional activity with submicromolar IC(50) values. Inhibition of TEAD binding to YAP1 in mammalian cells was also observed. Several compounds inhibited the cell viability of sarcoma, hepatocellular carcinoma, glioblastoma, and breast cancer cells with single-digit micromolar IC(50) values.

-	~~Authors~~:	+	Small-Molecule Cyanamide Pan-TEAD.YAP1 Covalent Antagonists.,Bum-Erdene K, Yeh IJ, Gonzalez-Gutierrez G, Ghozayel MK, Pollok K, Meroueh SO J Med Chem. 2023 Jan 12;66(1):266-284. doi: 10.1021/acs.jmedchem.2c01189. Epub , 2022 Dec 23. PMID:36562717<ref>PMID:36562717</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7t2k" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Bum-Erdene K]]
		+	[[Category: Gonzalez-Gutierrez G]]
		+	[[Category: Meroueh SO]]

OCA: Protected "7t2k" [edit=sysop:move=sysop]

OCA — Wed, 15 Dec 2021 15:42:10 GMT

Protected "7t2k" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:42, 15 December 2021

OCA: New page: '''Unreleased structure''' The entry 7t2k is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 15 Dec 2021 15:42:09 GMT

New page: '''Unreleased structure''' The entry 7t2k is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7t2k is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]