7t7v - Revision history

OCA at 13:07, 1 March 2024

OCA — Fri, 01 Mar 2024 13:07:32 GMT

←Older revision		Revision as of 13:07, 1 March 2024
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	<StructureSection load='7t7v' size='340' side='right'caption='[[7t7v]], [[Resolution\|resolution]] 10.00Å' scene=''>		<StructureSection load='7t7v' size='340' side='right'caption='[[7t7v]], [[Resolution\|resolution]] 10.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[7t7v]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T7V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7t7v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T7V FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>[[~~7t7c~~\|~~7t7c~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 10Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t7v OCA], [https://pdbe.org/7t7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t7v RCSB], [https://www.ebi.ac.uk/pdbsum/7t7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t7v ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t7v OCA], [https://pdbe.org/7t7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t7v RCSB], [https://www.ebi.ac.uk/pdbsum/7t7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t7v ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/UN13A_MOUSE UN13A_MOUSE]] Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Facilitates neuronal dense core vesicles fusion as well as controls the location and efficiency of their synaptic release (PubMed:23229896). Also involved in secretory granule priming in insulin secretion. Plays a role in dendrite formation by melanocytes (By similarity).[UniProtKB:Q62768][UniProtKB:Q9UPW8]<ref>PMID:10440375</ref> <ref>PMID:12070347</ref> <ref>PMID:15988013</ref> <ref>PMID:16644700</ref> <ref>PMID:16697276</ref> <ref>PMID:17267576</ref> <ref>PMID:17639022</ref> <ref>PMID:23229896</ref>	+	[https://www.uniprot.org/uniprot/UN13A_MOUSE UN13A_MOUSE] Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Facilitates neuronal dense core vesicles fusion as well as controls the location and efficiency of their synaptic release (PubMed:23229896). Also involved in secretory granule priming in insulin secretion. Plays a role in dendrite formation by melanocytes (By similarity).[UniProtKB:Q62768][UniProtKB:Q9UPW8]<ref>PMID:10440375</ref> <ref>PMID:12070347</ref> <ref>PMID:15988013</ref> <ref>PMID:16644700</ref> <ref>PMID:16697276</ref> <ref>PMID:17267576</ref> <ref>PMID:17639022</ref> <ref>PMID:23229896</ref>
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	How can exactly six SNARE complexes be assembled under each synaptic vesicle? Here we report cryo-EM crystal structures of the core domain of Munc13, the key chaperone that initiates SNAREpin assembly. The functional core of Munc13, consisting of C1-C2B-MUN-C2C (Munc13C) spontaneously crystallizes between phosphatidylserine-rich bilayers in two distinct conformations, each in a radically different oligomeric state. In the open conformation (state 1), Munc13C forms upright trimers that link the two bilayers, separating them by approximately 21 nm. In the closed conformation, six copies of Munc13C interact to form a lateral hexamer elevated approximately 14 nm above the bilayer. Open and closed conformations differ only by a rigid body rotation around a flexible hinge, which when performed cooperatively assembles Munc13 into a lateral hexamer (state 2) in which the key SNARE assembly-activating site of Munc13 is autoinhibited by its neighbor. We propose that each Munc13 in the lateral hexamer ultimately assembles a single SNAREpin, explaining how only and exactly six SNARE complexes are templated. We suggest that state 1 and state 2 may represent two successive states in the synaptic vesicle supply chain leading to "primed" ready-release vesicles in which SNAREpins are clamped and ready to release (state 3).	+
-		+
-	Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.,Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE Proc Natl Acad Sci U S A. 2022 Feb 15;119(7). pii: 2121259119. doi:, 10.1073/pnas.2121259119. PMID:35135883<ref>PMID:35135883</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 7t7v" style="background-color:#fffaf0;"></div~~>	+
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Grushin, K~~]]	+	[[Category: Rattus norvegicus]]
-	[[Category: ~~Sindelar, C V~~]]	+	[[Category: Grushin K]]
-	[[Category: ~~Exocytosis]]~~	+	[[Category: Sindelar CV]]
-	~~[[Category: Membrane fusion]]~~	+
-	~~[[Category: Munc13]]~~	+
-	~~[[Category: Synaptic transmission~~]]	+

OCA at 08:46, 23 February 2022

OCA — Wed, 23 Feb 2022 08:46:39 GMT

←Older revision		Revision as of 08:46, 23 February 2022
Line 1:		Line 1:

	==Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface==		==Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface==
-	<StructureSection load='7t7v' size='340' side='right'caption='[[7t7v]]' scene=''>	+	<StructureSection load='7t7v' size='340' side='right'caption='[[7t7v]], [[Resolution\|resolution]] 10.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T7V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7t7v]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T7V FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t7v OCA], [https://pdbe.org/7t7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t7v RCSB], [https://www.ebi.ac.uk/pdbsum/7t7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t7v ProSAT]</span></td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[7t7c\|7t7c]]</div></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t7v OCA], [https://pdbe.org/7t7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t7v RCSB], [https://www.ebi.ac.uk/pdbsum/7t7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t7v ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/UN13A_MOUSE UN13A_MOUSE]] Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Facilitates neuronal dense core vesicles fusion as well as controls the location and efficiency of their synaptic release (PubMed:23229896). Also involved in secretory granule priming in insulin secretion. Plays a role in dendrite formation by melanocytes (By similarity).[UniProtKB:Q62768][UniProtKB:Q9UPW8]<ref>PMID:10440375</ref> <ref>PMID:12070347</ref> <ref>PMID:15988013</ref> <ref>PMID:16644700</ref> <ref>PMID:16697276</ref> <ref>PMID:17267576</ref> <ref>PMID:17639022</ref> <ref>PMID:23229896</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	How can exactly six SNARE complexes be assembled under each synaptic vesicle? Here we report cryo-EM crystal structures of the core domain of Munc13, the key chaperone that initiates SNAREpin assembly. The functional core of Munc13, consisting of C1-C2B-MUN-C2C (Munc13C) spontaneously crystallizes between phosphatidylserine-rich bilayers in two distinct conformations, each in a radically different oligomeric state. In the open conformation (state 1), Munc13C forms upright trimers that link the two bilayers, separating them by approximately 21 nm. In the closed conformation, six copies of Munc13C interact to form a lateral hexamer elevated approximately 14 nm above the bilayer. Open and closed conformations differ only by a rigid body rotation around a flexible hinge, which when performed cooperatively assembles Munc13 into a lateral hexamer (state 2) in which the key SNARE assembly-activating site of Munc13 is autoinhibited by its neighbor. We propose that each Munc13 in the lateral hexamer ultimately assembles a single SNAREpin, explaining how only and exactly six SNARE complexes are templated. We suggest that state 1 and state 2 may represent two successive states in the synaptic vesicle supply chain leading to "primed" ready-release vesicles in which SNAREpins are clamped and ready to release (state 3).
		+
		+	Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.,Grushin K, Kalyana Sundaram RV, Sindelar CV, Rothman JE Proc Natl Acad Sci U S A. 2022 Feb 15;119(7). pii: 2121259119. doi:, 10.1073/pnas.2121259119. PMID:35135883<ref>PMID:35135883</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7t7v" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Grushin K]]	+	[[Category: Grushin, K]]
-	[[Category: Sindelar CV]]	+	[[Category: Sindelar, C V]]
		+	[[Category: Exocytosis]]
		+	[[Category: Membrane fusion]]
		+	[[Category: Munc13]]
		+	[[Category: Synaptic transmission]]

OCA at 07:26, 9 February 2022

OCA — Wed, 09 Feb 2022 07:26:22 GMT

←Older revision		Revision as of 07:26, 9 February 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 7t7v is ON HOLD until Paper Publication~~	+	==Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface==
-		+	<StructureSection load='7t7v' size='340' side='right'caption='[[7t7v]]' scene=''>
-	~~Authors: Grushin, K., Sindelar, C.V.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7T7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7T7V FirstGlance]. <br>
-	~~Description:~~ Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7t7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7t7v OCA], [https://pdbe.org/7t7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7t7v RCSB], [https://www.ebi.ac.uk/pdbsum/7t7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7t7v ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Grushin, K]]	+	__TOC__
-	[[Category: Sindelar~~, C.V~~]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Grushin K]]
		+	[[Category: Sindelar CV]]

OCA at 05:57, 19 January 2022

OCA — Wed, 19 Jan 2022 05:57:15 GMT

←Older revision		Revision as of 05:57, 19 January 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7t7v is ON HOLD	+	The entry 7t7v is ON HOLD until Paper Publication

	Authors: Grushin, K., Sindelar, C.V.		Authors: Grushin, K., Sindelar, C.V.
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	Description: Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface		Description: Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Sindelar, C.V]]
	[[Category: Grushin, K]]		[[Category: Grushin, K]]
		+	[[Category: Sindelar, C.V]]

OCA: Protected "7t7v" [edit=sysop:move=sysop]

OCA — Wed, 22 Dec 2021 14:09:24 GMT

Protected "7t7v" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:09, 22 December 2021

OCA: New page: '''Unreleased structure''' The entry 7t7v is ON HOLD Authors: Grushin, K., Sindelar, C.V. Description: Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface [[Category:...

OCA — Wed, 22 Dec 2021 14:09:22 GMT

New page: '''Unreleased structure''' The entry 7t7v is ON HOLD Authors: Grushin, K., Sindelar, C.V. Description: Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface [[Category:...

New page

'''Unreleased structure'''

The entry 7t7v is ON HOLD

Authors: Grushin, K., Sindelar, C.V.

Description: Munc13-1 C1-C2B-MUN-C2C Lateral conformation on lipid bilayer surface
[[Category: Unreleased Structures]]
[[Category: Sindelar, C.V]]
[[Category: Grushin, K]]