7tjc - Revision history

OCA at 09:45, 25 October 2023

OCA — Wed, 25 Oct 2023 09:45:59 GMT

←Older revision		Revision as of 09:45, 25 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7tjc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vicugna_pacos Vicugna pacos]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TJC FirstGlance]. <br>		<table><tr><td colspan='2'>[[7tjc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vicugna_pacos Vicugna pacos]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TJC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLM:CHLORAMPHENICOL'>CLM</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.35Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLM:CHLORAMPHENICOL'>CLM</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tjc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tjc OCA], [https://pdbe.org/7tjc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tjc RCSB], [https://www.ebi.ac.uk/pdbsum/7tjc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tjc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tjc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tjc OCA], [https://pdbe.org/7tjc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tjc RCSB], [https://www.ebi.ac.uk/pdbsum/7tjc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tjc ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:06, 24 November 2022

OCA — Thu, 24 Nov 2022 10:06:14 GMT

←Older revision		Revision as of 10:06, 24 November 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7tjc is ~~ON HOLD until Paper~~ Publication	+	==VHH Chl-B2 in complex with Chloramphenicol==
		+	<StructureSection load='7tjc' size='340' side='right'caption='[[7tjc]], [[Resolution\|resolution]] 1.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7tjc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vicugna_pacos Vicugna pacos]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7TJC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7TJC FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CLM:CHLORAMPHENICOL'>CLM</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7tjc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7tjc OCA], [https://pdbe.org/7tjc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7tjc RCSB], [https://www.ebi.ac.uk/pdbsum/7tjc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7tjc ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Antibiotics in aquaculture prevent bacterial infection of fish, but their misuse is a public health risk and contributes to the unintentional creation of multiresistant pathogens. Regulatory agencies cannot do the rigorous, expensive testing required to keep up with the volume of seafood shipments. Current rapid test kits for these drugs enable the increase in testing needed for adequate monitoring of food supply chains, but they lack a high degree of accuracy. To combat this, we set out to discover and engineer single-domain antibodies (VHHs) that bind to small molecule antibiotics, and that can be used in rapid test kits. The small size, solubility, and stability of VHHs are useful properties that can improve the reliability and shelf-life of test kits for these adulterants. Here, we report a novel anti-chloramphenicol VHH (Chl-VHH) with a disassociation constant of 57 nM. This was achieved by immunizing a llama against a chloramphenicol-keyhole limpet hemocyanin (KLH) conjugate and screening for high affinity binders through phage display. The crystal structure of the bound-VHH to chloramphenicol was key to identifying a mutation in the binding pocket that resulted in a 16-fold improvement in binding affinity. In addition, the structure provides new insights into VHH-hapten interactions that can guide future engineering of VHHs against additional targets.

-	~~Authors~~:	+	Structure and specificity of an anti-chloramphenicol single domain antibody for detection of amphenicol residues.,Swofford CA, Nordeen SA, Chen L, Desai MM, Chen J, Springs SL, Schwartz TU, Sinskey AJ Protein Sci. 2022 Nov;31(11):e4457. doi: 10.1002/pro.4457. PMID:36153664<ref>PMID:36153664</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7tjc" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Vicugna pacos]]
		+	[[Category: Nordeen SA]]
		+	[[Category: Schwartz TU]]

OCA at 05:35, 2 February 2022

OCA — Wed, 02 Feb 2022 05:35:54 GMT

←Older revision		Revision as of 05:35, 2 February 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7tjc is ON HOLD	+	The entry 7tjc is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7tjc" [edit=sysop:move=sysop]

OCA — Thu, 27 Jan 2022 05:30:31 GMT

Protected "7tjc" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:30, 27 January 2022

OCA: New page: '''Unreleased structure''' The entry 7tjc is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 27 Jan 2022 05:30:29 GMT

New page: '''Unreleased structure''' The entry 7tjc is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7tjc is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]