7ugm - Revision history

OCA at 17:15, 18 October 2023

OCA — Wed, 18 Oct 2023 17:15:54 GMT

←Older revision		Revision as of 17:15, 18 October 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7ugm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UGM FirstGlance]. <br>		<table><tr><td colspan='2'>[[7ugm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UGM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ugm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ugm OCA], [https://pdbe.org/7ugm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ugm RCSB], [https://www.ebi.ac.uk/pdbsum/7ugm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ugm ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ugm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ugm OCA], [https://pdbe.org/7ugm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ugm RCSB], [https://www.ebi.ac.uk/pdbsum/7ugm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ugm ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:22, 9 November 2022

OCA — Wed, 09 Nov 2022 07:22:43 GMT

←Older revision		Revision as of 07:22, 9 November 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7ugm is ~~ON HOLD until Paper~~ Publication	+	==Crystal Structure of BG24-iGL CDR3mat Fab==
		+	<StructureSection load='7ugm' size='340' side='right'caption='[[7ugm]], [[Resolution\|resolution]] 1.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7ugm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7UGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7UGM FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ugm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ugm OCA], [https://pdbe.org/7ugm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ugm RCSB], [https://www.ebi.ac.uk/pdbsum/7ugm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ugm ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	BG24, a VRC01-class broadly neutralizing antibody (bNAb) against HIV-1 Env with relatively few somatic hypermutations (SHMs), represents a promising target for vaccine strategies to elicit CD4-binding site (CD4bs) bNAbs. To understand how SHMs correlate with BG24 neutralization of HIV-1, we report 4.1 A and 3.4 A single-particle cryo-EM structures of two inferred germline (iGL) BG24 precursors complexed with engineered Env-based immunogens lacking CD4bs N-glycans. Structures reveal critical Env contacts by BG24iGL and identify antibody light chain structural features that impede Env recognition. In addition, biochemical data and cryo-EM structures of BG24iGL variants bound to Envs with CD4bs glycans present provide insights into N-glycan accommodation, including structural modes of light chain adaptations in the presence of the N276gp120 glycan. Together, these findings reveal Env regions critical for germline antibody recognition and potential sites to alter in immunogen design.

-	~~Authors~~:	+	HIV-1 CD4-binding site germline antibody-Env structures inform vaccine design.,Dam KA, Barnes CO, Gristick HB, Schoofs T, Gnanapragasam PNP, Nussenzweig MC, Bjorkman PJ Nat Commun. 2022 Oct 17;13(1):6123. doi: 10.1038/s41467-022-33860-2. PMID:36253376<ref>PMID:36253376</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7ugm" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Barnes CO]]
		+	[[Category: Bjorkman PJ]]
		+	[[Category: Dam KA]]

OCA at 10:24, 27 April 2022

OCA — Wed, 27 Apr 2022 10:24:30 GMT

←Older revision		Revision as of 10:24, 27 April 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7ugm is ON HOLD	+	The entry 7ugm is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7ugm" [edit=sysop:move=sysop]

OCA — Wed, 30 Mar 2022 09:37:27 GMT

Protected "7ugm" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:37, 30 March 2022

OCA: New page: '''Unreleased structure''' The entry 7ugm is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 30 Mar 2022 09:37:26 GMT

New page: '''Unreleased structure''' The entry 7ugm is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7ugm is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]