7vhv - Revision history

OCA at 17:25, 29 November 2023

OCA — Wed, 29 Nov 2023 17:25:13 GMT

←Older revision		Revision as of 17:25, 29 November 2023
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	==Crystal structure of S. aureus D-alanine alanyl carrier protein ligase==		==Crystal structure of S. aureus D-alanine alanyl carrier protein ligase==
-	<StructureSection load='7vhv' size='340' side='right'caption='[[7vhv]]' scene=''>	+	<StructureSection load='7vhv' size='340' side='right'caption='[[7vhv]], [[Resolution\|resolution]] 2.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VHV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7vhv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_Mu50 Staphylococcus aureus subsp. aureus Mu50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VHV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vhv OCA], [https://pdbe.org/7vhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vhv RCSB], [https://www.ebi.ac.uk/pdbsum/7vhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vhv ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.55Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vhv OCA], [https://pdbe.org/7vhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vhv RCSB], [https://www.ebi.ac.uk/pdbsum/7vhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vhv ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DLTA_STAAM DLTA_STAAM] Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D-alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	D-Alanylation of the teichoic acids of the Gram-positive bacterial cell wall plays crucial roles in bacterial physiology and virulence. Deprivation of D-alanine from the teichoic acids of Staphylococcus aureus impairs biofilm and colony formation, induces autolysis and ultimately renders methicillin-resistant S. aureus highly susceptible to antimicrobial agents and host defense peptides. Hence, the D-alanylation pathway has emerged as a promising antibacterial target against drug-resistant S. aureus. D-Alanylation of teichoic acids is mediated via the action of four proteins encoded by the dlt operon, DltABCD, all four of which are essential for the process. In order to develop novel antimicrobial agents against S. aureus, the D-alanyl carrier protein ligase DltA, which is the first protein in the D-alanylation pathway, was focused on. Here, the crystal structure of DltA from the methicillin-resistant S. aureus strain Mu50 is presented, which reveals the unique molecular details of the catalytic center and the role of the P-loop. Kinetic analysis shows that the enantioselectivity of S. aureus DltA is much higher than that of DltA from other species. In the presence of DltC, the enzymatic activity of DltA is increased by an order of magnitude, suggesting a new exploitable binding pocket. This discovery may pave the way for a new generation of treatments for drug-resistant S. aureus.
		+
		+	Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50.,Lee IG, Song C, Yang S, Jeon H, Park J, Yoon HJ, Im H, Kang SM, Eun HJ, Lee BJ Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):424-434. doi:, 10.1107/S2059798322000547. Epub 2022 Mar 16. PMID:35362466<ref>PMID:35362466</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7vhv" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Staphylococcus aureus subsp. aureus Mu50]]
	[[Category: Im HG]]		[[Category: Im HG]]
	[[Category: Lee BJ]]		[[Category: Lee BJ]]
	[[Category: Lee I-G]]		[[Category: Lee I-G]]
	[[Category: Yoon HJ]]		[[Category: Yoon HJ]]

OCA at 09:49, 13 April 2022

OCA — Wed, 13 Apr 2022 09:49:11 GMT

←Older revision		Revision as of 09:49, 13 April 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7vhv ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of S. aureus D-alanine alanyl carrier protein ligase==
-		+	<StructureSection load='7vhv' size='340' side='right'caption='[[7vhv]]' scene=''>
-	~~Authors~~: ~~Lee, B~~.J.~~, Lee, I~~.-G., ~~Im, H~~.G., ~~Yoon~~, H.J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VHV FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of S~~. ~~aureus D~~-~~alanine alanyl carrier protein ligase~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vhv OCA], [https://pdbe.org/7vhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vhv RCSB], [https://www.ebi.ac.uk/pdbsum/7vhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vhv ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Lee, B.J~~]]	+	__TOC__
-	[[Category: Lee~~, I.-G~~]]	+	</StructureSection>
-	[[Category: ~~Yoon, H.J~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Im, H.G~~]]	+	[[Category: Im HG]]
		+	[[Category: Lee BJ]]
		+	[[Category: Lee I-G]]
		+	[[Category: Yoon HJ]]

OCA at 04:21, 6 October 2021

OCA — Wed, 06 Oct 2021 04:21:20 GMT

←Older revision		Revision as of 04:21, 6 October 2021
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7vhv is ON HOLD	+	The entry 7vhv is ON HOLD until Paper Publication

	Authors: Lee, B.J., Lee, I.-G., Im, H.G., Yoon, H.J.		Authors: Lee, B.J., Lee, I.-G., Im, H.G., Yoon, H.J.
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	Description: Crystal structure of S. aureus D-alanine alanyl carrier protein ligase		Description: Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Yoon, H.J]]
	[[Category: Lee, B.J]]		[[Category: Lee, B.J]]
	[[Category: Lee, I.-G]]		[[Category: Lee, I.-G]]
		+	[[Category: Yoon, H.J]]
	[[Category: Im, H.G]]		[[Category: Im, H.G]]

OCA: Protected "7vhv" [edit=sysop:move=sysop]

OCA — Wed, 29 Sep 2021 07:54:40 GMT

Protected "7vhv" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:54, 29 September 2021

OCA: New page: '''Unreleased structure''' The entry 7vhv is ON HOLD Authors: Lee, B.J., Lee, I.-G., Im, H.G., Yoon, H.J. Description: Crystal structure of S. aureus D-alanine alanyl carrier protein l...

OCA — Wed, 29 Sep 2021 07:54:39 GMT

New page: '''Unreleased structure''' The entry 7vhv is ON HOLD Authors: Lee, B.J., Lee, I.-G., Im, H.G., Yoon, H.J. Description: Crystal structure of S. aureus D-alanine alanyl carrier protein l...

New page

'''Unreleased structure'''

The entry 7vhv is ON HOLD

Authors: Lee, B.J., Lee, I.-G., Im, H.G., Yoon, H.J.

Description: Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
[[Category: Unreleased Structures]]
[[Category: Yoon, H.J]]
[[Category: Lee, B.J]]
[[Category: Lee, I.-G]]
[[Category: Im, H.G]]