7vn2 - Revision history

OCA at 17:28, 29 November 2023

OCA — Wed, 29 Nov 2023 17:28:31 GMT

←Older revision		Revision as of 17:28, 29 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7vn2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana], [https://en.wikipedia.org/wiki/Serratia_sp._FS14 Serratia sp. FS14] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VN2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7vn2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana], [https://en.wikipedia.org/wiki/Serratia_sp._FS14 Serratia sp. FS14] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VN2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.42Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vn2 OCA], [https://pdbe.org/7vn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vn2 RCSB], [https://www.ebi.ac.uk/pdbsum/7vn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vn2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vn2 OCA], [https://pdbe.org/7vn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vn2 RCSB], [https://www.ebi.ac.uk/pdbsum/7vn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vn2 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 08:13, 7 December 2022

OCA — Wed, 07 Dec 2022 08:13:25 GMT

←Older revision		Revision as of 08:13, 7 December 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7vn2 is ~~ON HOLD until 2024~~-01-10	+	==Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT==
-		+	<StructureSection load='7vn2' size='340' side='right'caption='[[7vn2]], [[Resolution\|resolution]] 2.42Å' scene=''>
-	~~Authors~~: ~~Nosaki~~, S., ~~Tanokura~~, M., ~~Miyakawa~~, T.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[7vn2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana], [https://en.wikipedia.org/wiki/Serratia_sp._FS14 Serratia sp. FS14] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7VN2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7VN2 FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure~~ of ~~MBP-fused BIL1~~/~~BZR1~~ (21-90) in ~~complex with double~~-~~stranded DNA contaning ATCACGTGAT~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7vn2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7vn2 OCA], [https://pdbe.org/7vn2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7vn2 RCSB], [https://www.ebi.ac.uk/pdbsum/7vn2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7vn2 ProSAT]</span></td></tr>
-	[[Category: ~~Tanokura, M~~]]	+	</table>
-	[[Category: Miyakawa, T]]	+	== Function ==
-	[[Category: Nosaki, S]]	+	[https://www.uniprot.org/uniprot/A0A4P1LXE0_SERSF A0A4P1LXE0_SERSF] Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins.[RuleBase:RU365005][https://www.uniprot.org/uniprot/BZR1_ARATH BZR1_ARATH] Transcriptional repressor that binds to the brassinosteroid (BR) response element (BRRE) 5'-CGTG(T/C)G-3' in gene promoter. Regulates positively the brassinosteroid-signaling pathway (PubMed:33324437). Mediates downstream growth responses and negative feedback regulation of brassinosteroid biosynthesis. Promotes growth. Modulates ovule initiation and development by monitoring the expression of genes related to ovule development (e.g. HLL, ANT, and AP2). Regulates negatively the abscisic acid (ABA) signaling pathway during the post-germination stage (PubMed:33324437).<ref>PMID:15681342</ref> <ref>PMID:22914576</ref> <ref>PMID:33324437</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arabidopsis thaliana]]
		+	[[Category: Large Structures]]
		+	[[Category: Serratia sp. FS14]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Miyakawa T]]
		+	[[Category: Nosaki S]]
		+	[[Category: Tanokura M]]

OCA at 16:29, 19 October 2022

OCA — Wed, 19 Oct 2022 16:29:29 GMT

←Older revision		Revision as of 16:29, 19 October 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7vn2 is ON HOLD until ~~Paper Publication~~	+	The entry 7vn2 is ON HOLD until 2024-01-10

	Authors: Nosaki, S., Tanokura, M., Miyakawa, T.		Authors: Nosaki, S., Tanokura, M., Miyakawa, T.

OCA at 12:59, 3 November 2021

OCA — Wed, 03 Nov 2021 12:59:28 GMT

←Older revision		Revision as of 12:59, 3 November 2021
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7vn2 is ON HOLD	+	The entry 7vn2 is ON HOLD until Paper Publication

	Authors: Nosaki, S., Tanokura, M., Miyakawa, T.		Authors: Nosaki, S., Tanokura, M., Miyakawa, T.
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	Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT		Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Nosaki, S]]
	[[Category: Tanokura, M]]		[[Category: Tanokura, M]]
	[[Category: Miyakawa, T]]		[[Category: Miyakawa, T]]
		+	[[Category: Nosaki, S]]

OCA: Protected "7vn2" [edit=sysop:move=sysop]

OCA — Wed, 20 Oct 2021 15:15:40 GMT

Protected "7vn2" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:15, 20 October 2021

OCA: New page: '''Unreleased structure''' The entry 7vn2 is ON HOLD Authors: Nosaki, S., Tanokura, M., Miyakawa, T. Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with doubl...

OCA — Wed, 20 Oct 2021 15:15:39 GMT

New page: '''Unreleased structure''' The entry 7vn2 is ON HOLD Authors: Nosaki, S., Tanokura, M., Miyakawa, T. Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with doubl...

New page

'''Unreleased structure'''

The entry 7vn2 is ON HOLD

Authors: Nosaki, S., Tanokura, M., Miyakawa, T.

Description: Crystal structure of MBP-fused BIL1/BZR1 (21-90) in complex with double-stranded DNA contaning ATCACGTGAT
[[Category: Unreleased Structures]]
[[Category: Nosaki, S]]
[[Category: Tanokura, M]]
[[Category: Miyakawa, T]]