7w46 - Revision history

OCA at 17:35, 29 November 2023

OCA — Wed, 29 Nov 2023 17:35:57 GMT

←Older revision		Revision as of 17:35, 29 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7w46]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W46 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W46 FirstGlance]. <br>		<table><tr><td colspan='2'>[[7w46]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W46 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W46 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w46 OCA], [https://pdbe.org/7w46 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w46 RCSB], [https://www.ebi.ac.uk/pdbsum/7w46 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w46 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w46 OCA], [https://pdbe.org/7w46 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w46 RCSB], [https://www.ebi.ac.uk/pdbsum/7w46 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w46 ProSAT]</span></td></tr>
	</table>		</table>

OCA at 19:23, 19 October 2022

OCA — Wed, 19 Oct 2022 19:23:07 GMT

←Older revision		Revision as of 19:23, 19 October 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7w46 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of Bacillus subtilis YjoB with ADP==
		+	<StructureSection load='7w46' size='340' side='right'caption='[[7w46]], [[Resolution\|resolution]] 2.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7w46]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7W46 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7W46 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7w46 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7w46 OCA], [https://pdbe.org/7w46 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7w46 RCSB], [https://www.ebi.ac.uk/pdbsum/7w46 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7w46 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YJOB_BACSU YJOB_BACSU] Shows ATPase activity.<ref>PMID:14757246</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	AAA+ ATPases are ubiquitous proteins associated with most cellular processes, including DNA unwinding and protein unfolding. Their functional and structural properties are typically determined by domains and motifs added to the conserved ATPases domain. Currently, the molecular function and structure of many ATPases remain elusive. Here, we report the crystal structure and biochemical analyses of YjoB, a Bacillus subtilis AAA+ protein. The crystal structure revealed that the YjoB hexamer forms a bucket hat-shaped structure with a porous chamber. Biochemical analyses showed that YjoB prevents the aggregation of vegetative catalase KatA and gluconeogenesis-specific glyceraldehyde-3 phosphate dehydrogenase GapB but not citrate synthase, a conventional substrate. Structural and biochemical analyses further showed that the internal chamber of YjoB is necessary for inhibition of substrate aggregation. Our results suggest that YjoB, conserved in the class Bacilli, is a potential molecular chaperone acting in the starvation/stationary phases of B. subtilis growth.

-	~~Authors~~:	+	Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone.,Kwon E, Dahal P, Kim DY Proc Natl Acad Sci U S A. 2022 Oct 11;119(41):e2207856119. doi:, 10.1073/pnas.2207856119. Epub 2022 Oct 3. PMID:36191235<ref>PMID:36191235</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 7w46" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Bacillus subtilis subsp. subtilis str. 168]]
		+	[[Category: Large Structures]]
		+	[[Category: Dahal P]]
		+	[[Category: Kim DY]]
		+	[[Category: Kwon E]]

OCA at 09:23, 5 January 2022

OCA — Wed, 05 Jan 2022 09:23:42 GMT

←Older revision		Revision as of 09:23, 5 January 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7w46 is ON HOLD	+	The entry 7w46 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "7w46" [edit=sysop:move=sysop]

OCA — Wed, 01 Dec 2021 05:22:23 GMT

Protected "7w46" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:22, 1 December 2021

OCA: New page: '''Unreleased structure''' The entry 7w46 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 01 Dec 2021 05:22:22 GMT

New page: '''Unreleased structure''' The entry 7w46 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 7w46 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]