7yqa - Revision history

OCA at 18:11, 29 November 2023

OCA — Wed, 29 Nov 2023 18:11:18 GMT

←Older revision		Revision as of 18:11, 29 November 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7yqa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YQA FirstGlance]. <br>		<table><tr><td colspan='2'>[[7yqa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YQA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yqa OCA], [https://pdbe.org/7yqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yqa RCSB], [https://www.ebi.ac.uk/pdbsum/7yqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yqa ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yqa OCA], [https://pdbe.org/7yqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yqa RCSB], [https://www.ebi.ac.uk/pdbsum/7yqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yqa ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:25, 15 February 2023

OCA — Wed, 15 Feb 2023 10:25:14 GMT

←Older revision		Revision as of 10:25, 15 February 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 7yqa is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii==
		+	<StructureSection load='7yqa' size='340' side='right'caption='[[7yqa]], [[Resolution\|resolution]] 1.85Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7yqa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YQA FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yqa OCA], [https://pdbe.org/7yqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yqa RCSB], [https://www.ebi.ac.uk/pdbsum/7yqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yqa ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A1C9ZZ39_CHLRE A0A1C9ZZ39_CHLRE]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	D-Threonine aldolase (DTA) is a pyridoxal-5'-phosphate-dependent enzyme which catalyzes the reversible aldol reaction of glycine with a corresponding aldehyde to yield the D-form beta-hydroxy-alpha-amino acid. This study produced and investigated the crystal structure of DTA from Chlamydomonas reinhardtii (CrDTA) at 1.85 A resolution. To our knowledge, this is the first report on the crystal structure of eukaryotic DTA. Compared with the structure of bacterial DTA, CrDTA has a similar arrangement of active-site residues. On the other hand, we speculated that some non-conserved residues alter the affinity for substrates and inhibitors. The structure of CrDTA could provide insights into the structural framework for structure-guided protein engineering studies to modify reaction selectivity.

-	~~Authors: Hirato~~, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K.	+	Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii.,Hirato Y, Goto M, Mizobuchi T, Muramatsu H, Tanigawa M, Nishimura K Acta Crystallogr F Struct Biol Commun. 2023 Feb 1;79(Pt 2):31-37. doi: , 10.1107/S2053230X23000304. Epub 2023 Feb 2. PMID:36748339<ref>PMID:36748339</ref>

-	~~Description: Crystal structure~~ of D-~~threonine aldolase from~~ Chlamydomonas reinhardtii	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Nishimura, K~~]]	+	<div class="pdbe-citations 7yqa" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Tanigawa, M~~]]	+	== References ==
-	[[Category: ~~Muramatsu, H~~]]	+	<references/>
-	[[Category: ~~Hirato, Y~~]]	+	__TOC__
-	[[Category: ~~Goto, M~~]]	+	</StructureSection>
-	[[Category: ~~Mizobuchi, T~~]]	+	[[Category: Chlamydomonas reinhardtii]]
		+	[[Category: Large Structures]]
		+	[[Category: Goto M]]
		+	[[Category: Hirato Y]]
		+	[[Category: Mizobuchi T]]
		+	[[Category: Muramatsu H]]
		+	[[Category: Nishimura K]]
		+	[[Category: Tanigawa M]]

OCA at 05:19, 31 August 2022

OCA — Wed, 31 Aug 2022 05:19:12 GMT

←Older revision		Revision as of 05:19, 31 August 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7yqa is ON HOLD	+	The entry 7yqa is ON HOLD until Paper Publication

	Authors: Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K.		Authors: Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K.
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	[[Category: Nishimura, K]]		[[Category: Nishimura, K]]
	[[Category: Tanigawa, M]]		[[Category: Tanigawa, M]]
-	[[Category: Goto, M]]
	[[Category: Muramatsu, H]]		[[Category: Muramatsu, H]]
	[[Category: Hirato, Y]]		[[Category: Hirato, Y]]
		+	[[Category: Goto, M]]
	[[Category: Mizobuchi, T]]		[[Category: Mizobuchi, T]]

OCA: Protected "7yqa" [edit=sysop:move=sysop]

OCA — Thu, 18 Aug 2022 03:32:18 GMT

Protected "7yqa" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:32, 18 August 2022

OCA: New page: '''Unreleased structure''' The entry 7yqa is ON HOLD Authors: Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K. Description: Crystal structure of D-threon...

OCA — Thu, 18 Aug 2022 03:32:16 GMT

New page: '''Unreleased structure''' The entry 7yqa is ON HOLD Authors: Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K. Description: Crystal structure of D-threon...

New page

'''Unreleased structure'''

The entry 7yqa is ON HOLD

Authors: Hirato, Y., Goto, M., Mizobuchi, T., Muramatsu, H., Tanigawa, M., Nishimura, K.

Description: Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii
[[Category: Unreleased Structures]]
[[Category: Nishimura, K]]
[[Category: Tanigawa, M]]
[[Category: Goto, M]]
[[Category: Muramatsu, H]]
[[Category: Hirato, Y]]
[[Category: Mizobuchi, T]]