OCA at 19:25, 19 October 2022

OCA — Wed, 19 Oct 2022 19:25:13 GMT

←Older revision		Revision as of 19:25, 19 October 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 7yqz is ON HOLD~~	+	==SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3)==
-		+	<StructureSection load='7yqz' size='340' side='right'caption='[[7yqz]], [[Resolution\|resolution]] 3.84Å' scene=''>
-	~~Authors: Wang, L.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[7yqz]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7YQZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7YQZ FirstGlance]. <br>
-	~~Description:~~ SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3)	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7yqz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7yqz OCA], [https://pdbe.org/7yqz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7yqz RCSB], [https://www.ebi.ac.uk/pdbsum/7yqz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7yqz ProSAT]</span></td></tr>
-	[[Category: Wang, L]]	+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SPIKE_SARS2 SPIKE_SARS2] attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Binding to human ACE2 receptor and internalization of the virus into the endosomes of the host cell induces conformational changes in the Spike glycoprotein (PubMed:32142651, PubMed:32075877, PubMed:32155444). Uses also human TMPRSS2 for priming in human lung cells which is an essential step for viral entry (PubMed:32142651). Proteolysis by cathepsin CTSL may unmask the fusion peptide of S2 and activate membranes fusion within endosomes.[HAMAP-Rule:MF_04099]<ref>PMID:32075877</ref> <ref>PMID:32142651</ref> <ref>PMID:32155444</ref> mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Severe acute respiratory syndrome coronavirus 2]]
		+	[[Category: Wang L]]

OCA: Protected "7yqz" [edit=sysop:move=sysop]

OCA — Thu, 18 Aug 2022 03:34:48 GMT

Protected "7yqz" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:34, 18 August 2022

OCA: New page: '''Unreleased structure''' The entry 7yqz is ON HOLD Authors: Wang, L. Description: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3) Category: Unreleased Structures [[Cate...

OCA — Thu, 18 Aug 2022 03:34:46 GMT

New page: '''Unreleased structure''' The entry 7yqz is ON HOLD Authors: Wang, L. Description: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3) Category: Unreleased Structures [[Cate...

New page

'''Unreleased structure'''

The entry 7yqz is ON HOLD

Authors: Wang, L.

Description: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3)
[[Category: Unreleased Structures]]
[[Category: Wang, L]]

7yqz - Revision history

OCA at 19:25, 19 October 2022

OCA: Protected "7yqz" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7yqz is ON HOLD Authors: Wang, L. Description: SARS-CoV-2 BA.2.75 S Trimer in complex with S309 (state3) Category: Unreleased Structures [[Cate...