7zfg - Revision history

OCA at 13:31, 1 February 2024

OCA — Thu, 01 Feb 2024 13:31:45 GMT

←Older revision		Revision as of 13:31, 1 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7zfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[7zfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZFG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IV5:(1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol'>IV5</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.62Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IV5:(1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol'>IV5</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zfg OCA], [https://pdbe.org/7zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zfg RCSB], [https://www.ebi.ac.uk/pdbsum/7zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zfg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zfg OCA], [https://pdbe.org/7zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zfg RCSB], [https://www.ebi.ac.uk/pdbsum/7zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zfg ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:11, 24 November 2022

OCA — Thu, 24 Nov 2022 10:11:42 GMT

←Older revision		Revision as of 10:11, 24 November 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7zfg is ~~ON HOLD until Paper~~ Publication	+	==VDR complex with aromatic D-ring analog==
		+	<StructureSection load='7zfg' size='340' side='right'caption='[[7zfg]], [[Resolution\|resolution]] 2.62Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7zfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZFG FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IV5:(1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol'>IV5</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zfg OCA], [https://pdbe.org/7zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zfg RCSB], [https://www.ebi.ac.uk/pdbsum/7zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zfg ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/VDRA_DANRE VDRA_DANRE] Nuclear hormone receptor. Transcription factor that mediates the action of vitamin D3 by controlling the expression of hormone sensitive genes. Regulates transcription of hormone sensitive genes via its association with the WINAC complex, a chromatin-remodeling complex. Plays a central role in calcium homeostasis.<ref>PMID:17218092</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The toxic calcemic effects of the natural hormone 1alpha,25-dihydroxyvitamin D(3) (1,25D(3), 1,25-dihydroxycholecalciferol) in the treatment of hyperproliferative diseases demand the development of highly active and noncalcemic vitamin D analogues. We report the development of two highly active and noncalcemic analogues of 1,25D(3) that lack the C-ring and possess an m-phenylene ring that replaces the natural D-ring. The new analogues (3a, 3b) are characterized by an additional six-carbon hydroxylated side chain attached either to the aromatic nucleus or to the triene system. Both compounds were synthesized by the Pd-catalyzed tandem cyclization/cross coupling approach starting from alkyne 6 and diphenol 8. Key steps include a stereoselective Cu-assisted addition of a Grignard reagent to an aromatic alkyne and a Takai olefination of an aromatic aldehyde. The new compounds are noncalcemic and show transcriptional and antiproliferative activities similar to 1,25D(3). Structural analysis revealed that they induce a large conformational rearrangement of the vitamin D receptor around helix 6.

-	~~Authors: Rochel~~, N.	+	Design, Synthesis, Biological Activity, and Structural Analysis of Novel Des-C-Ring and Aromatic-D-Ring Analogues of 1alpha,25-Dihydroxyvitamin D(3).,Seoane S, Gogoi P, Zarate-Ruiz A, Peluso-Iltis C, Peters S, Guiberteau T, Maestro MA, Perez-Fernandez R, Rochel N, Mourino A J Med Chem. 2022 Oct 13;65(19):13112-13124. doi: 10.1021/acs.jmedchem.2c00900. , Epub 2022 Sep 27. PMID:36166643<ref>PMID:36166643</ref>

-	~~Description: VDR complex with aromatic D~~-~~ring analog~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: Rochel, N]]	+	<div class="pdbe-citations 7zfg" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Danio rerio]]
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Rochel N]]

OCA at 10:39, 27 April 2022

OCA — Wed, 27 Apr 2022 10:39:39 GMT

←Older revision		Revision as of 10:39, 27 April 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7zfg is ON HOLD	+	The entry 7zfg is ON HOLD until Paper Publication

	Authors: Rochel, N.		Authors: Rochel, N.

OCA: Protected "7zfg" [edit=sysop:move=sysop]

OCA — Wed, 06 Apr 2022 09:28:03 GMT

Protected "7zfg" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:28, 6 April 2022

OCA: New page: '''Unreleased structure''' The entry 7zfg is ON HOLD Authors: Rochel, N. Description: VDR complex with aromatic D-ring analog Category: Unreleased Structures [[Category: Rochel, N]...

OCA — Wed, 06 Apr 2022 09:28:02 GMT

New page: '''Unreleased structure''' The entry 7zfg is ON HOLD Authors: Rochel, N. Description: VDR complex with aromatic D-ring analog Category: Unreleased Structures [[Category: Rochel, N]...

New page

'''Unreleased structure'''

The entry 7zfg is ON HOLD

Authors: Rochel, N.

Description: VDR complex with aromatic D-ring analog
[[Category: Unreleased Structures]]
[[Category: Rochel, N]]