OCA at 08:17, 7 December 2022

OCA — Wed, 07 Dec 2022 08:17:23 GMT

←Older revision		Revision as of 08:17, 7 December 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 7zx8 is ~~ON HOLD until Paper~~ Publication	+	==Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC)==
		+	<StructureSection load='7zx8' size='340' side='right'caption='[[7zx8]], [[Resolution\|resolution]] 3.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[7zx8]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZX8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZX8 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zx8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zx8 OCA], [https://pdbe.org/7zx8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zx8 RCSB], [https://www.ebi.ac.uk/pdbsum/7zx8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zx8 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A8D1DPV6_PIG A0A8D1DPV6_PIG] DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.[RuleBase:RU004279]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	RNA polymerase II (Pol II) carries out transcription of both protein-coding and non-coding genes. Whereas Pol II initiation at protein-coding genes has been studied in detail, Pol II initiation at non-coding genes, such as small nuclear RNA (snRNA) genes, is less well understood at the structural level. Here, we study Pol II initiation at snRNA gene promoters and show that the snRNA-activating protein complex (SNAPc) enables DNA opening and transcription initiation independent of TFIIE and TFIIH in vitro. We then resolve cryo-EM structures of the SNAPc-containing Pol IIpre-initiation complex (PIC) assembled on U1 and U5 snRNA promoters. The core of SNAPc binds two turns of DNA and recognizes the snRNA promoter-specific proximal sequence element (PSE), located upstream of the TATA box-binding protein TBP. Two extensions of SNAPc, called wing-1 and wing-2, bind TFIIA and TFIIB, respectively, explaining how SNAPc directs Pol II to snRNA promoters. Comparison of structures of closed and open promoter complexes elucidates TFIIH-independent DNA opening. These results provide the structural basis of Pol II initiation at non-coding RNA gene promoters.

-	~~Authors:~~ Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., Cramer, P.	+	Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II.,Rengachari S, Schilbach S, Kaliyappan T, Gouge J, Zumer K, Schwarz J, Urlaub H, Dienemann C, Vannini A, Cramer P Nat Struct Mol Biol. 2022 Nov 24. doi: 10.1038/s41594-022-00857-w. PMID:36424526<ref>PMID:36424526</ref>

-	~~Description: Structure~~ of ~~SNAPc containing Pol II pre~~-~~initiation complex bound to U1 snRNA promoter (OC)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Dienemann, C~~]]	+	<div class="pdbe-citations 7zx8" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Schwarz, J~~]]	+	== References ==
-	[[Category: ~~Zumer, K~~]]	+	<references/>
-	[[Category: ~~Schilbach, S~~]]	+	__TOC__
-	[[Category: Rengachari, S]]	+	</StructureSection>
-	[[Category: ~~Gouge, J~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Kaliyappan, T~~]]	+	[[Category: Large Structures]]
-	[[Category: Urlaub, H]]	+	[[Category: Sus scrofa]]
-	[[Category: ~~Cramer, P~~]]	+	[[Category: Cramer P]]
-	[[Category: ~~Vannini, A~~]]	+	[[Category: Dienemann C]]
		+	[[Category: Gouge J]]
		+	[[Category: Kaliyappan T]]
		+	[[Category: Rengachari S]]
		+	[[Category: Schilbach S]]
		+	[[Category: Schwarz J]]
		+	[[Category: Urlaub H]]
		+	[[Category: Vannini A]]
		+	[[Category: Zumer K]]

OCA at 08:17, 30 November 2022

OCA — Wed, 30 Nov 2022 08:17:07 GMT

←Older revision		Revision as of 08:17, 30 November 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7zx8 is ON HOLD	+	The entry 7zx8 is ON HOLD until Paper Publication

	Authors: Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., Cramer, P.		Authors: Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., Cramer, P.

OCA: Protected "7zx8" [edit=sysop:move=sysop]

OCA — Wed, 08 Jun 2022 04:15:43 GMT

Protected "7zx8" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:15, 8 June 2022

OCA: New page: '''Unreleased structure''' The entry 7zx8 is ON HOLD Authors: Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., C...

OCA — Wed, 08 Jun 2022 04:15:42 GMT

New page: '''Unreleased structure''' The entry 7zx8 is ON HOLD Authors: Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., C...

New page

'''Unreleased structure'''

The entry 7zx8 is ON HOLD

Authors: Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., Cramer, P.

Description: Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC)
[[Category: Unreleased Structures]]
[[Category: Dienemann, C]]
[[Category: Schwarz, J]]
[[Category: Zumer, K]]
[[Category: Schilbach, S]]
[[Category: Rengachari, S]]
[[Category: Gouge, J]]
[[Category: Kaliyappan, T]]
[[Category: Urlaub, H]]
[[Category: Cramer, P]]
[[Category: Vannini, A]]

7zx8 - Revision history

OCA at 08:17, 7 December 2022

OCA at 08:17, 30 November 2022

OCA: Protected "7zx8" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 7zx8 is ON HOLD Authors: Rengachari, S., Schilbach, S., Kaliyappan, T., Gouge, J., Zumer, K., Schwarz, J., Urlaub, H., Dienemann, C., Vannini, A., C...