7zya - Revision history

OCA at 13:35, 1 February 2024

OCA — Thu, 01 Feb 2024 13:35:40 GMT

←Older revision		Revision as of 13:35, 1 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[7zya]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_harzianum Trichoderma harzianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZYA FirstGlance]. <br>		<table><tr><td colspan='2'>[[7zya]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_harzianum Trichoderma harzianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZYA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.12Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zya OCA], [https://pdbe.org/7zya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zya RCSB], [https://www.ebi.ac.uk/pdbsum/7zya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zya ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zya OCA], [https://pdbe.org/7zya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zya RCSB], [https://www.ebi.ac.uk/pdbsum/7zya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zya ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CHI33_TRIHA CHI33_TRIHA]] Secreted chitinase involved in the degradation of chitin, a component of the cell walls of fungi and exoskeletal elements of some animals (including worms and arthropods). Plays a morphogenetic role during apical growth, cell division and differentiation (cell wall morphogenesis). May be involved in the degradation and further assimilation of phytopathogenic fungi, namely mycoparasitism, the major mechanism accounting for the antagonistic activity against phytopathogenic fungi displayed by Trichoderma.<ref>PMID:1606968</ref>	+	[https://www.uniprot.org/uniprot/CHI33_TRIHA CHI33_TRIHA] Secreted chitinase involved in the degradation of chitin, a component of the cell walls of fungi and exoskeletal elements of some animals (including worms and arthropods). Plays a morphogenetic role during apical growth, cell division and differentiation (cell wall morphogenesis). May be involved in the degradation and further assimilation of phytopathogenic fungi, namely mycoparasitism, the major mechanism accounting for the antagonistic activity against phytopathogenic fungi displayed by Trichoderma.<ref>PMID:1606968</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 7zya" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 7zya" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Chitinase 3D structures\|Chitinase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 19:36, 7 September 2022

OCA — Wed, 07 Sep 2022 19:36:39 GMT

←Older revision		Revision as of 19:36, 7 September 2022
Line 1:		Line 1:

	==Structure of Chit33 from Trichoderma harzianum.==		==Structure of Chit33 from Trichoderma harzianum.==
-	<StructureSection load='7zya' size='340' side='right'caption='[[7zya]]' scene=''>	+	<StructureSection load='7zya' size='340' side='right'caption='[[7zya]], [[Resolution\|resolution]] 1.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZYA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[7zya]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_harzianum Trichoderma harzianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZYA FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zya OCA], [https://pdbe.org/7zya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zya RCSB], [https://www.ebi.ac.uk/pdbsum/7zya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zya ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zya OCA], [https://pdbe.org/7zya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zya RCSB], [https://www.ebi.ac.uk/pdbsum/7zya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zya ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/CHI33_TRIHA CHI33_TRIHA]] Secreted chitinase involved in the degradation of chitin, a component of the cell walls of fungi and exoskeletal elements of some animals (including worms and arthropods). Plays a morphogenetic role during apical growth, cell division and differentiation (cell wall morphogenesis). May be involved in the degradation and further assimilation of phytopathogenic fungi, namely mycoparasitism, the major mechanism accounting for the antagonistic activity against phytopathogenic fungi displayed by Trichoderma.<ref>PMID:1606968</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Chitin is the most widespread amino renewable carbohydrate polymer in nature and the second most abundant polysaccharide. Therefore, chitin and chitinolytic enzymes are becoming more importance for biotechnological applications in food, health and agricultural fields, the design of effective enzymes being a paramount issue. We report the crystal structure of the plant-type endo-chitinase Chit33 from Trichoderma harzianum and its D165A/E167A-Chit33-(NAG)4 complex, which showed an extended catalytic cleft with six binding subsites lined with many polar interactions. The major trait of Chit33 is the location of the non-conserved Asp117 and Arg274 acting as a clamp, fixing the distorted conformation of the sugar at subsite -1 and the bent shape of the substrate, which occupies the full catalytic groove. Relevant residues were selected for mutagenesis experiments, the variants being biochemically characterized through their hydrolytic activity against colloidal chitin and other polymeric substrates with different molecular weights and deacetylation percentages. The mutant S118Y stands out, showing a superior performance in all the substrates tested, as well as detectable transglycosylation capacity, with this variant providing a promising platform for generation of novel Chit33 variants with adjusted performance by further design of rational mutants'. The putative role of Tyr in binding was extrapolated from molecular dynamics simulation.
		+
		+	Structure-Function Insights into the Fungal Endo-Chitinase Chit33 Depict its Mechanism on Chitinous Material.,Jimenez-Ortega E, Kidibule PE, Fernandez-Lobato M, Sanz-Aparicio J Int J Mol Sci. 2022 Jul 9;23(14). pii: ijms23147599. doi: 10.3390/ijms23147599. PMID:35886948<ref>PMID:35886948</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 7zya" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Trichoderma harzianum]]
	[[Category: Jimenez-Ortega E]]		[[Category: Jimenez-Ortega E]]
	[[Category: Sanz-Aparicio J]]		[[Category: Sanz-Aparicio J]]

OCA at 06:39, 31 August 2022

OCA — Wed, 31 Aug 2022 06:39:39 GMT

←Older revision		Revision as of 06:39, 31 August 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 7zya ~~is ON HOLD until Paper Publication~~	+	==Structure of Chit33 from Trichoderma harzianum.==
-		+	<StructureSection load='7zya' size='340' side='right'caption='[[7zya]]' scene=''>
-	~~Authors~~: ~~Jimenez~~-~~Ortega, E~~., ~~Sanz~~-~~Aparicio~~, J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7ZYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7ZYA FirstGlance]. <br>
-	~~Description~~: ~~Structure of Chit33 from Trichoderma harzianum~~.	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7zya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7zya OCA], [https://pdbe.org/7zya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7zya RCSB], [https://www.ebi.ac.uk/pdbsum/7zya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7zya ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Jimenez-Ortega, E]]	+	__TOC__
-	[[Category: Sanz-Aparicio, J]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Jimenez-Ortega E]]
		+	[[Category: Sanz-Aparicio J]]

OCA at 04:04, 15 June 2022

OCA — Wed, 15 Jun 2022 04:04:30 GMT

←Older revision		Revision as of 04:04, 15 June 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 7zya is ON HOLD	+	The entry 7zya is ON HOLD until Paper Publication

	Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.		Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.

OCA: Protected "7zya" [edit=sysop:move=sysop]

OCA — Wed, 08 Jun 2022 04:17:42 GMT

Protected "7zya" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:17, 8 June 2022

OCA: New page: '''Unreleased structure''' The entry 7zya is ON HOLD Authors: Jimenez-Ortega, E., Sanz-Aparicio, J. Description: Structure of Chit33 from Trichoderma harzianum. [[Category: Unreleased ...

OCA — Wed, 08 Jun 2022 04:17:41 GMT

New page: '''Unreleased structure''' The entry 7zya is ON HOLD Authors: Jimenez-Ortega, E., Sanz-Aparicio, J. Description: Structure of Chit33 from Trichoderma harzianum. [[Category: Unreleased ...

New page

'''Unreleased structure'''

The entry 7zya is ON HOLD

Authors: Jimenez-Ortega, E., Sanz-Aparicio, J.

Description: Structure of Chit33 from Trichoderma harzianum.
[[Category: Unreleased Structures]]
[[Category: Jimenez-Ortega, E]]
[[Category: Sanz-Aparicio, J]]